View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_128 (Length: 248)
Name: NF3229_high_128
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_128 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 3148665 - 3148895
Alignment:
| Q |
1 |
ttccctcaacagacaaacaagtcgtttgaagattaaggatgatgagtttcgtaagagcttgagattggataagaagagtagcaaaaatagcagaagtggc |
100 |
Q |
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| T |
3148665 |
ttccctcaacagacaaacaagtcgtttgaagattaaggatgatgagtttcgtaagagcgtgagattggataagaagagtagcaaaaatagcagaagtggc |
3148764 |
T |
|
| Q |
101 |
atgcagttgttgccgtctcggtcgaggagaatatttgacaagttatggaatgttggtagtaaaggacatggagagaataggagttcagagacttcaggga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3148765 |
atgcagttgttgccgtctcggtcgaggagaatatttgacaagttatggaatgttggtagtaaaggacatggagagaataggagttcagagacttcaggga |
3148864 |
T |
|
| Q |
201 |
gttctaatagtccaacttctgtagtccttgg |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3148865 |
gttctaatagtccaacttctgtagtccttgg |
3148895 |
T |
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