View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_high_133 (Length: 247)

Name: NF3229_high_133
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_high_133
NF3229_high_133
[»] chr7 (5 HSPs)
chr7 (1-184)||(28180379-28180566)
chr7 (91-155)||(30120205-30120269)
chr7 (1-58)||(30120111-30120168)
chr7 (92-168)||(30125252-30125328)
chr7 (6-58)||(30125162-30125214)
[»] scaffold1051 (1 HSPs)
scaffold1051 (94-155)||(1971-2032)
[»] chr2 (3 HSPs)
chr2 (93-178)||(21430160-21430244)
chr2 (91-172)||(21426470-21426551)
chr2 (7-53)||(21426593-21426639)
[»] chr8 (2 HSPs)
chr8 (92-177)||(41311298-41311383)
chr8 (93-177)||(43164977-43165061)
[»] chr5 (1 HSPs)
chr5 (91-152)||(29261370-29261431)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 28180379 - 28180566
Alignment:
Q  1 attcctgttggtctcatgattatgaaccaaccaatgaatagccccgtttaagagcaactctgttcactgctatcatagctagcagcaactatataaggta 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  28180379 attcctcttggtctcatgattatgaaccaaccaatgaatagccccgtttaagagcaactctgttcactgctatcatatctagcagcaaccatataaggta 28180478  T
Q  101 aatgagaaccacactc----aatatgtttccacttattagctctcaatgagaaaatctctaattcaattgaactagataccgggtcaa 184  Q
    | ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28180479 attgagaaccacactcaattaatatgtttccacttattagctctcaatgagaaaatctctaattcaattgaactagataccggatcaa 28180566  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 30120205 - 30120269
Alignment:
Q  91 atataaggtaaatgagaaccacactcaatatgtttccacttattagctctcaatgagaaaatctc 155  Q
    ||||||||||||||| |||||  |||||  |||||||||||||||| ||||||||||||||||||    
T  30120205 atataaggtaaatgaaaaccaacctcaacttgtttccacttattagttctcaatgagaaaatctc 30120269  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 30120111 - 30120168
Alignment:
Q  1 attcctgttggtctcatgattatgaaccaaccaatgaatagccccgtttaagagcaac 58  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| || |||| ||||    
T  30120111 attcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaac 30120168  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 30125252 - 30125328
Alignment:
Q  92 tataaggtaaatgagaaccacactcaatatgtttccacttattagctctcaatgagaaaatctctaattcaattgaa 168  Q
    ||||||| ||||||||| || ||||||| |  | |||||||||||||||||||| ||||||||| || |||||||||    
T  30125252 tataaggcaaatgagaatcaaactcaatttcctcccacttattagctctcaatgggaaaatctccaagtcaattgaa 30125328  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 30125162 - 30125214
Alignment:
Q  6 tgttggtctcatgattatgaaccaaccaatgaatagccccgtttaagagcaac 58  Q
    |||||||||||||||||||||||| ||||||||||| ||| || |||| ||||    
T  30125162 tgttggtctcatgattatgaaccagccaatgaatagtcccattcaagaacaac 30125214  T

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Target: scaffold1051 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 1971 - 2032
Alignment:
Q  94 taaggtaaatgagaaccacactcaatatgtttccacttattagctctcaatgagaaaatctc 155  Q
    ||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  1971 taaggcaaaggagaaccaaactcaatttgtttccacttattagctctcaatgagaaaatctc 2032  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 21430244 - 21430160
Alignment:
Q  93 ataaggtaaatgagaaccacactcaatatgtttccacttattagctctcaatgagaaaatctctaattcaattgaactagataccg 178  Q
    |||||| ||||||||| ||  |||||| | |||||| | ||||||||||||||||||||||||||| |||||||||||||||||||    
T  21430244 ataaggcaaatgagaagcaacctcaattt-tttccattgattagctctcaatgagaaaatctctaagtcaattgaactagataccg 21430160  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 21426551 - 21426470
Alignment:
Q  91 atataaggtaaatgagaaccacactcaatatgtttccacttattagctctcaatgagaaaatctctaattcaattgaactag 172  Q
    |||||||| ||||||||| ||  |||||| |||||||| |||| ||||||||||||||||||||  || |||||||||||||    
T  21426551 atataaggcaaatgagaagcaacctcaatttgtttccatttatgagctctcaatgagaaaatcttcaagtcaattgaactag 21426470  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 21426639 - 21426593
Alignment:
Q  7 gttggtctcatgattatgaaccaaccaatgaatagccccgtttaaga 53  Q
    ||||||||||  ||||||||||| ||||||||||||||| |||||||    
T  21426639 gttggtctcagaattatgaaccagccaatgaatagccccatttaaga 21426593  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 41311298 - 41311383
Alignment:
Q  92 tataaggtaaatgagaaccacactcaatatgtttccacttattagctctcaatgagaaaatctctaattcaattgaactagatacc 177  Q
    ||||||| |||| |||| || ||||||| |||| ||| | |||| ||||||||||||||||||| || ||||||||||||||||||    
T  41311298 tataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaaaatctccaagtcaattgaactagatacc 41311383  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 43164977 - 43165061
Alignment:
Q  93 ataaggtaaatgagaaccacactcaatatgtttccacttattagctctcaatgagaaaatctctaattcaattgaactagatacc 177  Q
    |||||| |||| |||| || ||||||| |||| ||| | |||||||||||||||||||||||| || ||||| ||||||||||||    
T  43164977 ataaggcaaatcagaatcaaactcaatttgttcccattcattagctctcaatgagaaaatctccaagtcaatcgaactagatacc 43165061  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 29261431 - 29261370
Alignment:
Q  91 atataaggtaaatgagaaccacactcaatatgtttccacttattagctctcaatgagaaaat 152  Q
    ||||||||||||||| |||||   ||||  |||||| |||||||||||||||||||||||||    
T  29261431 atataaggtaaatgaaaaccaacatcaacttgtttctacttattagctctcaatgagaaaat 29261370  T

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