View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_high_137 (Length: 244)

Name: NF3229_high_137
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_high_137
NF3229_high_137
[»] chr6 (2 HSPs)
chr6 (1-236)||(15517518-15517753)
chr6 (1-236)||(34380162-34380397)
[»] chr8 (1 HSPs)
chr8 (1-223)||(7485057-7485279)
[»] chr4 (5 HSPs)
chr4 (1-236)||(55936414-55936651)
chr4 (6-236)||(52914425-52914655)
chr4 (33-198)||(39537686-39537851)
chr4 (1-170)||(23568287-23568456)
chr4 (1-170)||(55934704-55934860)
[»] chr3 (3 HSPs)
chr3 (6-190)||(52865699-52865883)
chr3 (1-170)||(7882345-7882514)
chr3 (131-236)||(54595396-54595500)
[»] chr2 (7 HSPs)
chr2 (1-170)||(13882590-13882759)
chr2 (1-170)||(14022715-14022884)
chr2 (1-170)||(13988199-13988368)
chr2 (1-170)||(13994097-13994266)
chr2 (1-170)||(8510412-8510581)
chr2 (161-205)||(31023809-31023853)
chr2 (24-65)||(6090553-6090594)
[»] chr7 (2 HSPs)
chr7 (1-170)||(5950101-5950270)
chr7 (21-78)||(41807141-41807198)
[»] chr1 (2 HSPs)
chr1 (1-170)||(23398483-23398652)
chr1 (24-65)||(26034354-26034395)
[»] chr5 (2 HSPs)
chr5 (1-170)||(8042671-8042840)
chr5 (28-65)||(6231789-6231826)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 15517753 - 15517518
Alignment:
Q  1 tttttgtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatatttta 100  Q
    |||| |||| ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||  |||||| |||||||||||||    
T  15517753 ttttggtttgtaaattggttgtgagccattggatttagaaagaacattttgaatggcacagattttttggcaggttgacccattagaatagtatatttta 15517654  T
Q  101 atctttaaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaatttaagtaaatgattttgttgcgcatatgg 200  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  15517653 atctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaatttaagtaaatgattttgttgcgcatatga 15517554  T
Q  201 ttttcttgtgtatatgttcccaggagaatctctgct 236  Q
    ||||||||||||||||||||||||| ||||| ||||    
T  15517553 ttttcttgtgtatatgttcccaggaaaatctttgct 15517518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34380397 - 34380162
Alignment:
Q  1 tttttgtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatatttta 100  Q
    |||| |||| ||||||||| |||||||||| |||||||||||||||||||||||  || |||||||||||||| ||||  ||||||||||||||||||||    
T  34380397 ttttggtttgtaaattggttgtgagccattggatttagaaagaacattttgaataacacagatttcttggcagattgacccattaggatagtatatttta 34380298  T
Q  101 atctttaaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaatttaagtaaatgattttgttgcgcatatgg 200  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  34380297 atctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattctcaatttaagtaaatgattttgttgcgcatatgg 34380198  T
Q  201 ttttcttgtgtatatgttcccaggagaatctctgct 236  Q
    ||||||||||||||||||||||||| ||||| ||||    
T  34380197 ttttcttgtgtatatgttcccaggaaaatctttgct 34380162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7485279 - 7485057
Alignment:
Q  1 tttttgtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatatttta 100  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||| ||||| ||||||| |||||||||  ||||||||  ||||||||||||||||||||    
T  7485279 tttttgtttgtaaattggttgtgagccattggatttagaaagaatattttaaatggcacagatttcttatcaggttgacccattaggatagtatatttta 7485180  T
Q  101 atctttaaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaatttaagtaaatgattttgttgcgcatatgg 200  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7485179 atctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaatttaagtaaatgattttgttgcgcatatgg 7485080  T
Q  201 ttttcttgtgtatatgttcccag 223  Q
    |||||||||||||||||||||||    
T  7485079 ttttcttgtgtatatgttcccag 7485057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 55936651 - 55936414
Alignment:
Q  1 tttttgtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatat--tt 98  Q
    |||| |||| |||||||||  ||||||||| ||||||||||||||||||| |||| ||  ||||||||||||||||||  ||||||||||||||||  ||    
T  55936651 ttttggtttgtaaattggttatgagccattggatttagaaagaacattttaaatgacactgatttcttggcaggttgactcattaggatagtatatattt 55936552  T
Q  99 taatctttaaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaatttaagtaaatgattttgttgcgcatat 198  Q
    ||||||||||||||||| || || ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55936551 taatctttaaagttgatatttaataacttaaatgattttgcaaacaatttatgtaaagggtgttattgtcaatttaagtaaatgattttgttgcgcatat 55936452  T
Q  199 ggttttcttgtgtatatgttcccaggagaatctctgct 236  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  55936451 ggttttcttgtgtatatgttcccaggaaaatctttgct 55936414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 52914655 - 52914425
Alignment:
Q  6 gtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatattttaatctt 105  Q
    |||| ||||||||| |||||||||| |||||||| ||||| |||| |||| || | |||||||  ||||||||  || ||||||| ||||||||||||||    
T  52914655 gtttgtaaattggttgtgagccattggatttagagagaacgttttaaatgacacaaatttcttaacaggttgacccactaggataatatattttaatctt 52914556  T
Q  106 taaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaatttaagtaaatgattttgttgcgcatatggttttc 205  Q
    ||||||||||||| || |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  52914555 taaagttgatctttaataacttaaatgattttgcaaacaatttacataaagggtgttattgtcaatttaagtaaatgattttgttgtgcatatggttttc 52914456  T
Q  206 ttgtgtatatgttcccaggagaatctctgct 236  Q
    ||||| |||||||| ||| | ||||| ||||    
T  52914455 ttgtgcatatgttcgcagaaaaatctttgct 52914425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 33 - 198
Target Start/End: Complemental strand, 39537851 - 39537686
Alignment:
Q  33 atttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatattttaatctttaaagttgatcttaaaaaacttaaatg 132  Q
    |||||||||||||||||||||||| | |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| || |||| |||||    
T  39537851 atttagaaagaacattttgaatggtacagatttcttggcaggttgacctattaggatagtatattttaatctttaaagttgatctttaataactcaaatg 39537752  T
Q  133 attttgcaaacaatttacgtaaagggtattattgtcaatttaagtaaatgattttgttgcgcatat 198  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||    
T  39537751 attttgcaaacaatttacgtaaatggtgttattgtcaatttaagtaaatgattttgttgtgcatat 39537686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 23568287 - 23568456
Alignment:
Q  1 tttttgtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatatttta 100  Q
    |||| |||| ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||  || |||||||||||||||||    
T  23568287 ttttagtttttaaattggttgtgagccattggatttagaaagaacattttgaatggcacagatttcttggcagattgacccactaggatagtatatttta 23568386  T
Q  101 atctttaaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaa 170  Q
    ||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23568387 atctttaaagttgatatttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa 23568456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 55934860 - 55934704
Alignment:
Q  1 tttttgtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatatttta 100  Q
    |||| |||| ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||  || |||||||||||||||||    
T  55934860 ttttagtttgtaaattggttgtgagccattggatttagaaagaacattttgaatggcacagatttcttgacaggttgacccactaggatagtatatttta 55934761  T
Q  101 atctttaaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaa 170  Q
    ||||||             || ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  55934760 atcttt-------------aataacttaaatgattttgcaaacaatttacgtaaatggtgttattgtcaa 55934704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 52865699 - 52865883
Alignment:
Q  6 gtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatattttaatctt 105  Q
    |||| ||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  52865699 gtttgtaaattggttgtgagccattggatttagaaagagcattttgaatggcatagatttcttggcaggttgacccattaggatagtatattttaatctt 52865798  T
Q  106 taaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaatttaagtaaatgattttgtt 190  Q
    ||||||||||||| || |||| |||| ||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  52865799 taaagttgatctttaataactcaaataattttacaaacaattgacgtaaatggtgttattgtcaatttaagtaaatgattttgtt 52865883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 7882514 - 7882345
Alignment:
Q  1 tttttgtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatatttta 100  Q
    |||| |||| ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||  || || ||||||||||||||    
T  7882514 ttttagtttgtaaattggttgtgagccattggatttagaaagaacattttgaatggcacagatttcttgacaggttgacccactatgatagtatatttta 7882415  T
Q  101 atctttaaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaa 170  Q
    |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7882414 atctttaaagttaatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa 7882345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 54595396 - 54595500
Alignment:
Q  131 tgattttgcaaacaatttacgtaaagggtattattgtcaatttaagtaaatgattttgttgcgcatatggttttcttgtgtatatgttcccaggagaatc 230  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||    
T  54595396 tgattttgcaaacaatttatgtaaatggtgttattgtcaatttaagtaaatga-tttgttgcgcatatggttttcttatgtatatgttcccagaaaaatc 54595494  T
Q  231 tctgct 236  Q
    | ||||    
T  54595495 tttgct 54595500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 13882590 - 13882759
Alignment:
Q  1 tttttgtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatatttta 100  Q
    |||| |||| ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||  || |||||||||||||||||    
T  13882590 ttttagtttgtaaattggttgtgagccattggatttagaaagaacattttgaatggcacagatttcttggcaggttgacccactaggatagtatatttta 13882689  T
Q  101 atctttaaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaa 170  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13882690 atctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa 13882759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 14022715 - 14022884
Alignment:
Q  1 tttttgtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatatttta 100  Q
    |||| |||| ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||  || |||||||||||||||||    
T  14022715 ttttagtttgtaaattggttgtgagccattggatttagaaagaacattttgaatggcacagatttcttggcaggttgacccactaggatagtatatttta 14022814  T
Q  101 atctttaaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaa 170  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14022815 atctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa 14022884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 13988199 - 13988368
Alignment:
Q  1 tttttgtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatatttta 100  Q
    |||| |||| ||||||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  13988199 ttttagtttgtaaattggttgtgagccattgaatttagaaagaacattttgaatggcacagatttcttggcaggttgacgcactaggatagtatatttta 13988298  T
Q  101 atctttaaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaa 170  Q
    ||||||||||||||| || || ||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  13988299 atctttaaagttgatatttaataacttaaatgatttttcaaacaatttacgtaaagggtgttattgtcaa 13988368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 13994097 - 13994266
Alignment:
Q  1 tttttgtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatatttta 100  Q
    |||| |||| ||||||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  13994097 ttttagtttgtaaattggttgtgagccattgaatttagaaagaacattttgaatggcacagatttcttggcaggttgacgcactaggatagtatatttta 13994196  T
Q  101 atctttaaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaa 170  Q
    ||||||||||||||| || || ||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  13994197 atctttaaagttgatatttaataacttaaatgatttttcaaacaatttacgtaaagggtgttattgtcaa 13994266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 8510412 - 8510581
Alignment:
Q  1 tttttgtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatatttta 100  Q
    |||| |||| ||||||||| ||||| |||| |||||||||||||||||||||||| || |||||| ||| ||||||||  || |||||||||||||||||    
T  8510412 ttttagtttgtaaattggttgtgagtcattggatttagaaagaacattttgaatgacacagattttttgacaggttgacccactaggatagtatatttta 8510511  T
Q  101 atctttaaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaa 170  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8510512 atctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa 8510581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 31023809 - 31023853
Alignment:
Q  161 ttattgtcaatttaagtaaatgattttgttgcgcatatggttttc 205  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  31023809 ttattgtcaatttaagtaaatgattttgttgcgcatatgattttc 31023853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 6090553 - 6090594
Alignment:
Q  24 agccattagatttagaaagaacattttgaatggcatagattt 65  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  6090553 agccattagatttagaaaaaaggttttgaatggcatagattt 6090594  T

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Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 5950101 - 5950270
Alignment:
Q  1 tttttgtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatatttta 100  Q
    |||| |||| ||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||  || ||||||| |||||||||    
T  5950101 ttttagtttgtaaattggttgtgagccattggatttagaaagaacattttgaatggcacagatttctttgcaggttgacccactaggataatatatttta 5950200  T
Q  101 atctttaaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaa 170  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5950201 atctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa 5950270  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 41807198 - 41807141
Alignment:
Q  21 gtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttga 78  Q
    ||||||||||||| ||||||||||  ||||||||| ||||||||| || |||| ||||    
T  41807198 gtgagccattagaattagaaagaaggttttgaatgacatagatttgtttgcagcttga 41807141  T

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Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 23398652 - 23398483
Alignment:
Q  1 tttttgtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatatttta 100  Q
    |||| |||| ||| ||||| ||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||||||  || |||||||||||||||||    
T  23398652 ttttagtttgtaagttggttgtgagtcattggatttagaaagaacattttgaatggcacagatttcttgacaggttgacccactaggatagtatatttta 23398553  T
Q  101 atctttaaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaa 170  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23398552 atctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa 23398483  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 26034395 - 26034354
Alignment:
Q  24 agccattagatttagaaagaacattttgaatggcatagattt 65  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  26034395 agccattagatttagaaagaaggttttgaatggcatagattt 26034354  T

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Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 8042840 - 8042671
Alignment:
Q  1 tttttgtttataaattggtggtgagccattagatttagaaagaacattttgaatggcatagatttcttggcaggttgatgcattaggatagtatatttta 100  Q
    |||| |||| ||||||||| |||||||||| ||||||||||||| |||||||||||||   |||||||| ||||||||  || |||||||||||||||||    
T  8042840 ttttagtttgtaaattggttgtgagccattggatttagaaagaatattttgaatggcacgtatttcttgacaggttgacccactaggatagtatatttta 8042741  T
Q  101 atctttaaagttgatcttaaaaaacttaaatgattttgcaaacaatttacgtaaagggtattattgtcaa 170  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8042740 atctttaaagttgatctttaataacttaaatgattttgcaaacaatttacgtaaagggtgttattgtcaa 8042671  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 6231826 - 6231789
Alignment:
Q  28 attagatttagaaagaacattttgaatggcatagattt 65  Q
    |||||||||||||||||  |||||||||||||||||||    
T  6231826 attagatttagaaagaagcttttgaatggcatagattt 6231789  T

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