View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_14 (Length: 463)
Name: NF3229_high_14
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 9 - 447
Target Start/End: Complemental strand, 3131959 - 3131524
Alignment:
| Q |
9 |
gagatgaaaaacgaagcaccactaccaaatatcgaaaaattgacagctcaacctttagaagactatatgcatgaataaataaatcatacttaaatgaagg |
108 |
Q |
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| T |
3131959 |
gagatgaaaaacgaagcaccactaccaaatatcgaaaaattgacagctcaacctttagaagactatatgaatgaataaataaatcatacttaaatgaagg |
3131860 |
T |
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| Q |
109 |
ttggtgtcttggtgacaataggatagagtatatatttatcttcttttgattagtggagcattccctttggttgagatttatttattttt-atgtatactt |
207 |
Q |
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| T |
3131859 |
ttggtgtcttggtgacaataggatagagtatatatttatcttcttttgattagtggagcattccctttggttgagatttatttatttttcatgtatactt |
3131760 |
T |
|
| Q |
208 |
tggtgcaacctactagtttgaatttgaagcatattttctttttgtgtaggtatgaaatattagataactactatcaacattttcgctaatacttactctt |
307 |
Q |
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| T |
3131759 |
tggtgcaacctactagtttgaatttgaagcatattttctttttgtgtaggtatgaaatattagataactactatcaacattttcgctaatacttactctt |
3131660 |
T |
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| Q |
308 |
ttactatgtaaaataatgagttcaacaatttaaaaatgtatataaaagtggtagaacctatatatataaatctcatcaaatgaaagagtatattaaaaag |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
3131659 |
ttactatgtaaaataatgagttcaacaatttaaaaatgcatataaaagtggttgaacc----tatataaatttcatcaaatgaaagagtatattaaaaag |
3131564 |
T |
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| Q |
408 |
agagctttcattagactcaaacattaattttggtgataaa |
447 |
Q |
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| T |
3131563 |
agagctttcattagactcaaacattaattttggtgataaa |
3131524 |
T |
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