View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_143 (Length: 240)
Name: NF3229_high_143
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_143 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 27780948 - 27780730
Alignment:
| Q |
5 |
gcaaaatactaaatactagcctcaatttgtagagattcatattcttaaataaatagggaaa-aaataaacaaatcataattataaccaagttatacggaa |
103 |
Q |
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| T |
27780948 |
gcaaaatactaaatactagcctcaatttgtagagattcatattcttaaataaatagggaaataaataaacaaatcataattataaccaagttatacggaa |
27780849 |
T |
|
| Q |
104 |
actaaggcactcaaactgatgtaagagaagcatgaaatatgagcgtgcatgctatcagacggaagccatgaaaatagagatataaattatagataaaact |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27780848 |
actaaggcactcaaactgatgtaagagaagcatgaaatatgagcgtgcatgctatcagatggaagccatgaaaatagagatataaattatagataaaact |
27780749 |
T |
|
| Q |
204 |
acctcaaatatgctgttat |
222 |
Q |
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||||||||||||||||||| |
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| T |
27780748 |
acctcaaatatgctgttat |
27780730 |
T |
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