View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_144 (Length: 240)
Name: NF3229_high_144
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_144 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 34015078 - 34014856
Alignment:
| Q |
18 |
atattcgatctctagcataaacaaatcaacaatcacttgtcatattgaagggttataaatagaattaatcttgataaacaaaatggcatgtatcaaatag |
117 |
Q |
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| T |
34015078 |
atattcgatctctagcataaacaaatcaacaatcacttgtcatattgaagggttataaatagaattaatcttgctaaacaaaatggcttgtatcaaatag |
34014979 |
T |
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| Q |
118 |
atgaattatttttgtttaatatatgacctaagtaagtccatattaattattacgtaccttgatgtttccaattagcatagtgactagaaggaggccactg |
217 |
Q |
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| T |
34014978 |
atgaattatttttgttcaatatatgacctaagtaagtccatattaattattacgtaccttgatgtttccaattagcatagtgactagaaggaggccactg |
34014879 |
T |
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| Q |
218 |
gttaatataatagtgttgaaaac |
240 |
Q |
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| T |
34014878 |
gttaatataatagtgttgaaaac |
34014856 |
T |
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