View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_146 (Length: 239)
Name: NF3229_high_146
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_146 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37224330 - 37224107
Alignment:
| Q |
1 |
caagttcttcacaatggcaagtggatcaatgtcagttccacttcaaactgtttcttggtccttgtctctgatcatcttgaggtacacaacaaacctttat |
100 |
Q |
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| T |
37224330 |
caagttcttcacaatggcaagtggatcaatgtcagttccacttcaaactgtttcttggtcctcgtctctgatcatcttgaggtacacaagaaacctttat |
37224231 |
T |
|
| Q |
101 |
tacctatccatt--tctttcctttttctaacaatgattttgaactatgtagcattgacactttagactcaaaatttgtctagtgtccaaaatggatcagc |
198 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37224230 |
tacctatccatttctctttcctttttctaacaatgattttgaactatgtagcactgacactttagactcaaaatttgtctagtgtccaaaatgtatcagc |
37224131 |
T |
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| Q |
199 |
gtccgacaccaacacgttactgat |
222 |
Q |
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|| ||||||||||||||||||||| |
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| T |
37224130 |
gttcgacaccaacacgttactgat |
37224107 |
T |
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