View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_155 (Length: 237)
Name: NF3229_high_155
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_155 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 44768886 - 44768665
Alignment:
| Q |
1 |
agtcaagtgtttgatgcgattagagaacttgggaatgaaggggttgagaaattggatcctcttgtcatcacatctgcatcatcactcagtaattctacct |
100 |
Q |
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| T |
44768886 |
agtcaagtgtttgatgcgattagagaacttgggaatgaaggggttgagaaattggatcctcttgtcatcacatctgcatcatcactcagtaattctacct |
44768787 |
T |
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| Q |
101 |
ctccttcaattattgtgcatattatattaatacgtgatgtgatgtgatacaatgaatttgcattaaannnnnnnatagggtactttagtttgtaaatata |
200 |
Q |
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||||||||||||||| |||||||| | ||||||||||||| |||| |||||||||||| || ||||||||||||||||||||||| |
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| T |
44768786 |
ctccttcaattattgggcatatta----------ttatgtgatgtgatataatggatttgcattaaatttttttatggggtactttagtttgtaaatata |
44768697 |
T |
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| Q |
201 |
accagtaaaatacatgtttcttttgcttacat |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
44768696 |
accagtaaaatacatgtttcttttgcttacat |
44768665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 28372593 - 28372814
Alignment:
| Q |
1 |
agtcaagtgtttgatgcgattagagaacttgggaatgaaggggttgagaaattggatcctcttgtcatcacatctgcatcatcactcagtaattctacct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28372593 |
agtcaagtgtttgatgcgattagagaacttgggaatgaaggggttgagaaattggatcctcttgtcatcacatctgcatcatcactcagtaattctacct |
28372692 |
T |
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| Q |
101 |
ctccttcaattattgtgcatattatattaatacgtgatgtgatgtgatacaatgaatttgcattaaannnnnnnatagggtactttagtttgtaaatata |
200 |
Q |
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|||||||||||||||||||||||| || ||||||||||||| |||| ||||||| |||| || ||||||||||||||||||||||| |
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| T |
28372693 |
ctccttcaattattgtgcatatta-at---------atgtgatgtgatataatggatttgcaataaatttttttatggggtactttagtttgtaaatata |
28372782 |
T |
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| Q |
201 |
accagtaaaatacatgtttcttttgcttacat |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
28372783 |
accagtaaaatacatgtttcttttgcttacat |
28372814 |
T |
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Back To:
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