View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_high_158 (Length: 236)

Name: NF3229_high_158
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_high_158
NF3229_high_158
[»] chr5 (4 HSPs)
chr5 (1-222)||(8820814-8821035)
chr5 (14-98)||(28586685-28586769)
chr5 (2-94)||(32172708-32172800)
chr5 (1-86)||(38047810-38047895)
[»] chr2 (12 HSPs)
chr2 (14-98)||(15120250-15120334)
chr2 (14-98)||(9996805-9996889)
chr2 (5-86)||(25609854-25609935)
chr2 (14-86)||(16503420-16503492)
chr2 (14-98)||(22878165-22878249)
chr2 (31-98)||(6547973-6548040)
chr2 (1-96)||(28803451-28803546)
chr2 (59-96)||(1633421-1633458)
chr2 (59-96)||(5043481-5043518)
chr2 (38-103)||(15370237-15370302)
chr2 (14-94)||(39622018-39622098)
chr2 (59-99)||(43259947-43259987)
[»] chr3 (8 HSPs)
chr3 (3-86)||(37273190-37273273)
chr3 (14-98)||(49845459-49845543)
chr3 (31-99)||(45590735-45590803)
chr3 (4-98)||(21872214-21872308)
chr3 (59-102)||(584158-584201)
chr3 (18-96)||(24158437-24158515)
chr3 (25-98)||(25459549-25459622)
chr3 (59-99)||(24684740-24684780)
[»] chr6 (8 HSPs)
chr6 (14-98)||(2460070-2460154)
chr6 (1-99)||(7148720-7148818)
chr6 (1-87)||(32917251-32917337)
chr6 (59-103)||(32205927-32205971)
chr6 (36-100)||(35070384-35070448)
chr6 (59-96)||(12111079-12111116)
chr6 (59-107)||(835171-835219)
chr6 (1-53)||(27857412-27857464)
[»] chr4 (12 HSPs)
chr4 (14-98)||(27123271-27123355)
chr4 (4-103)||(6987655-6987754)
chr4 (7-102)||(25717653-25717748)
chr4 (5-96)||(25896842-25896933)
chr4 (31-104)||(14011318-14011391)
chr4 (17-103)||(37575850-37575936)
chr4 (33-98)||(7367973-7368038)
chr4 (18-99)||(52388285-52388366)
chr4 (1-53)||(19429476-19429528)
chr4 (4-48)||(27725271-27725315)
chr4 (59-107)||(39691059-39691107)
chr4 (31-95)||(46860002-46860066)
[»] chr8 (12 HSPs)
chr8 (59-105)||(18331826-18331872)
chr8 (4-96)||(4055537-4055629)
chr8 (32-102)||(14926897-14926967)
chr8 (59-98)||(43368619-43368658)
chr8 (36-102)||(2606138-2606204)
chr8 (60-98)||(9700114-9700152)
chr8 (25-83)||(24326109-24326167)
chr8 (14-96)||(40071816-40071898)
chr8 (31-87)||(1664453-1664509)
chr8 (17-85)||(7918713-7918781)
chr8 (1-53)||(14949920-14949972)
chr8 (14-86)||(30191072-30191144)
[»] chr7 (7 HSPs)
chr7 (14-96)||(3836604-3836686)
chr7 (4-96)||(8427070-8427162)
chr7 (60-102)||(17988948-17988990)
chr7 (60-98)||(23214968-23215006)
chr7 (14-96)||(39542221-39542303)
chr7 (59-100)||(1418531-1418572)
chr7 (62-98)||(40598404-40598440)
[»] chr1 (12 HSPs)
chr1 (40-102)||(21002248-21002310)
chr1 (15-96)||(5157140-5157221)
chr1 (3-75)||(15579538-15579610)
chr1 (14-98)||(28467500-28467584)
chr1 (31-102)||(9507315-9507386)
chr1 (4-86)||(1662630-1662712)
chr1 (31-97)||(6659764-6659830)
chr1 (63-100)||(3319863-3319900)
chr1 (5-98)||(4033936-4034029)
chr1 (14-95)||(10199330-10199411)
chr1 (14-75)||(15709916-15709977)
chr1 (25-98)||(32515360-32515433)
[»] scaffold0100 (1 HSPs)
scaffold0100 (15-96)||(42677-42757)
[»] scaffold0199 (1 HSPs)
scaffold0199 (31-87)||(6894-6950)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8820814 - 8821035
Alignment:
Q  1 agcttatggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaag 100  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8820814 agcttatggactaatcataagttatttccctaagctctccaaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaag 8820913  T
Q  101 cctaaaaattatcagggttcgttttccttaggaacgggagagttgagacaaaaaagaactacacgtagacttttggcttaaaattatagattaaatttgt 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8820914 cctaaaaattatcagggttcgttttccttaggaaccggagagttgagacaaaaaagaactacacgtagacttttggcttaaaattatagattaaatttgt 8821013  T
Q  201 atgtactatgttagtatatagt 222  Q
    ||||||||||||||||||||||    
T  8821014 atgtactatgttagtatatagt 8821035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 28586769 - 28586685
Alignment:
Q  14 gtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    |||||||| ||||||| ||||||||||||||||||||||| |   ||||||||| ||||  || |||||| ||| ||||||||||    
T  28586769 gtcataagctatttccataagctctcccaaacagtttcacaaatgcttatgctattagactagttcaaattagtcaatccaaaca 28586685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 32172708 - 32172800
Alignment:
Q  2 gcttatggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatcca 94  Q
    ||||||||||  |||||||||| ||||| |||||||||||||||  | |||| ||  |||||||||||| ||||| |||||||| || |||||    
T  32172708 gcttatggacatgtcataagttgtttccataagctctcccaaactatctcacaagtgcttatgctagtatataagctcaaataaatagatcca 32172800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 38047895 - 38047810
Alignment:
Q  1 agcttatggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataag 86  Q
    |||||||||||  |||||||||| ||||| ||||||||||||||||||  ||| ||  |||||  ||||||||||| |||| ||||    
T  38047895 agcttatggacatgtcataagttgtttccataagctctcccaaacagtcacacaagtacttataatagtagataagttcaagtaag 38047810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 15120250 - 15120334
Alignment:
Q  14 gtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    |||||||||| ||||| ||||||||||||||||| ||||| |    ||||||||||||||||| |||||||||| ||||||||||    
T  15120250 gtcataagttgtttccataagctctcccaaacagattcacaactgtttatgctagtagataagttcaaataagtcaatccaaaca 15120334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 9996805 - 9996889
Alignment:
Q  14 gtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    |||||||||| ||||  ||||||||||||| |||| |||| ||  ||||||||||| |||||| |||||||||| || |||||||    
T  9996805 gtcataagttgtttctataagctctcccaagcagtctcacaagtacttatgctagttgataagctcaaataagtcaagccaaaca 9996889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 25609854 - 25609935
Alignment:
Q  5 tatggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataag 86  Q
    |||||| | |||||||||| ||||| |||||| | |||| |||| |||| || ||||||| ||||||||||| |||||||||    
T  25609854 tatggatttgtcataagttgtttccataagctattccaagcagtctcacaagttcttatgttagtagataagctcaaataag 25609935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 16503420 - 16503492
Alignment:
Q  14 gtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataag 86  Q
    |||||||| |||||| ||||||||||||||||||| |||| ||  ||||||| | |||||||  |||||||||    
T  16503420 gtcataagctatttctctaagctctcccaaacagtgtcacaagtacttatgccactagataatctcaaataag 16503492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 22878165 - 22878249
Alignment:
Q  14 gtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    ||||||| || ||||| |||| ||||||||||||| |||| ||  ||||||  ||| |||||| |||||||||| ||||||||||    
T  22878165 gtcataatttgtttccataaggtctcccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaaaca 22878249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 6547973 - 6548040
Alignment:
Q  31 taagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    ||||||| | |||||||| |||| || ||||||||||||||||||| |  ||||||| ||||||||||    
T  6547973 taagctccctcaaacagtctcacaagttcttatgctagtagataagcttgaataagtcaatccaaaca 6548040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 28803546 - 28803451
Alignment:
Q  1 agcttatggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaa 96  Q
    |||||||||||  |||||||||| ||||| || | |||| |||||||| ||||  |  |||||||  ||||||||| |||||||||| ||||||||    
T  28803546 agcttatggacatgtcataagttgtttccatatgttctctcaaacagtctcacatgtgcttatgccggtagataagctcaaataagtcaatccaaa 28803451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 1633458 - 1633421
Alignment:
Q  59 cttatgctagtagataagatcaaataagtaaatccaaa 96  Q
    |||||||||||||||||  |||||||||||||||||||    
T  1633458 cttatgctagtagataaactcaaataagtaaatccaaa 1633421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 5043518 - 5043481
Alignment:
Q  59 cttatgctagtagataagatcaaataagtaaatccaaa 96  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  5043518 cttatgctagtagataaggtcaaataagtcaatccaaa 5043481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 15370302 - 15370237
Alignment:
Q  38 tcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaagcct 103  Q
    ||||||||||| |||| |   ||||||| |||||||||| |||||||||| |||||||||| ||||    
T  15370302 tcccaaacagtctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaacaggcct 15370237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 39622018 - 39622098
Alignment:
Q  14 gtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatcca 94  Q
    |||||||||| ||| | |||| |||| |||||||| || | ||  ||||| | |||||||||| |||||||||||||||||    
T  39622018 gtcataagttgttttcataagttctctcaaacagtgtcgcaagtgcttatacaagtagataagttcaaataagtaaatcca 39622098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 43259947 - 43259987
Alignment:
Q  59 cttatgctagtagataagatcaaataagtaaatccaaacaa 99  Q
    |||||||||||||||||| |||||||||  |||||||||||    
T  43259947 cttatgctagtagataagttcaaataagccaatccaaacaa 43259987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 37273190 - 37273273
Alignment:
Q  3 cttatggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataag 86  Q
    |||||||||  |||||||||| ||||| |||||||||||||||||| |||||||  ||||||||| || ||||| |||||||||    
T  37273190 cttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgcttatgctaataaataagttcaaataag 37273273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 49845543 - 49845459
Alignment:
Q  14 gtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    |||||||||| ||||| |||||||||||||| |||||||  || | |||| |||||| ||||| |||||||||| ||||||||||    
T  49845543 gtcataagttgtttccataagctctcccaaatagtttcataagtttttatactagtatataagctcaaataagtcaatccaaaca 49845459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 45590735 - 45590803
Alignment:
Q  31 taagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaa 99  Q
    |||||||||||||||||| |||| ||  |||||||||||||||||| ||||| |||| ||| |||||||    
T  45590735 taagctctcccaaacagtctcacaagtgcttatgctagtagataagttcaaaaaagtcaattcaaacaa 45590803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 21872308 - 21872214
Alignment:
Q  4 ttatggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    ||||||||  |||||||| ||||| |  ||||| | ||||||||| |||| ||  ||||||  ||||||||||||||||||||| ||||||||||    
T  21872308 ttatggacatgtcataagctattttcaaaagcttttccaaacagtctcacaagtgcttatgtcagtagataagatcaaataagttaatccaaaca 21872214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 584158 - 584201
Alignment:
Q  59 cttatgctagtagataagatcaaataagtaaatccaaacaagcc 102  Q
    |||||||||||||||||| |||||||||| ||||||||| ||||    
T  584158 cttatgctagtagataagctcaaataagtcaatccaaaccagcc 584201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 24158515 - 24158437
Alignment:
Q  18 taagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaa 96  Q
    |||||| ||||| ||||||||| ||||||||||||| ||  ||||||  |||||||||| | |||||||  ||||||||    
T  24158515 taagttgtttccataagctctcgcaaacagtttcacaagtacttatgtcagtagataagcttaaataagccaatccaaa 24158437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 25459622 - 25459549
Alignment:
Q  25 tttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    |||| ||||||||| ||||||| | |||| ||  ||||||||||| |||||| |||||||| | ||||||||||    
T  25459622 tttctctaagctcttccaaacaatctcacaagtgcttatgctagttgataagctcaaataaatcaatccaaaca 25459549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 24684780 - 24684740
Alignment:
Q  59 cttatgctagtagataagatcaaataagtaaatccaaacaa 99  Q
    ||||||| |||||||||| |||||||||| |||||||||||    
T  24684780 cttatgccagtagataagctcaaataagttaatccaaacaa 24684740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 2460154 - 2460070
Alignment:
Q  14 gtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    |||||||||| ||||| ||||||||| |||||||| |||| ||  |||||||||||  ||||| |||||||||| ||||||||||    
T  2460154 gtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagttaatccaaaca 2460070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 7148720 - 7148818
Alignment:
Q  1 agcttatggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaa 99  Q
    ||||||||||| ||||||||||| ||||| |||||||| |  |||| | |||| ||  ||||||| | |||||||| |||||||||| || ||||||||    
T  7148720 agcttatggacaagtcataagttgtttccgtaagctctgctgaacactctcacaagtgcttatgcgactagataagctcaaataagtcaaaccaaacaa 7148818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 32917251 - 32917337
Alignment:
Q  1 agcttatggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagt 87  Q
    |||||||||||  |||||||||| ||||| |||||||||||||||||| |||| ||   |||| ||||||| |||| || |||||||    
T  32917251 agcttatggacatgtcataagttgtttccataagctctcccaaacagtctcacaagtgtttattctagtaggtaagctctaataagt 32917337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 32205971 - 32205927
Alignment:
Q  59 cttatgctagtagataagatcaaataagtaaatccaaacaagcct 103  Q
    |||||||||||||||||| |||||||||| |||||||||| ||||    
T  32205971 cttatgctagtagataaggtcaaataagtcaatccaaacaggcct 32205927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 35070448 - 35070384
Alignment:
Q  36 tctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaag 100  Q
    |||||||||||||  ||| ||  |||||| ||||||||||| ||||||||| |||||||||||||    
T  35070448 tctcccaaacagtcccacaagtgcttatgttagtagataagctcaaataagaaaatccaaacaag 35070384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 12111079 - 12111116
Alignment:
Q  59 cttatgctagtagataagatcaaataagtaaatccaaa 96  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  12111079 cttatgctagtagataagctcaaataagtcaatccaaa 12111116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 835219 - 835171
Alignment:
Q  59 cttatgctagtagataagatcaaataagtaaatccaaacaagcctaaaa 107  Q
    |||||||||||||||||| |||||||||  ||||||||||  |||||||    
T  835219 cttatgctagtagataagctcaaataaggcaatccaaacagtcctaaaa 835171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27857412 - 27857464
Alignment:
Q  1 agcttatggactagtcataagttatttccctaagctctcccaaacagtttcac 53  Q
    ||||||||||   |||||||||| ||| | |||||||||||||||||||||||    
T  27857412 agcttatggagatgtcataagttgttttcataagctctcccaaacagtttcac 27857464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 27123355 - 27123271
Alignment:
Q  14 gtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    |||||||||| ||||| ||||||||| |||||||| |||| ||  |||||||||||  ||||| |||||||||| ||||||||||    
T  27123355 gtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagttaatccaaaca 27123271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 6987754 - 6987655
Alignment:
Q  4 ttatggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaagcct 103  Q
    ||||||||  |||||||||| | ||| |||||||||||||||||| |||| | | |||||||||||||||||  |||| ||||| ||| |||||| ||||    
T  6987754 ttatggacatgtcataagttgtatccataagctctcccaaacagtctcacaaacacttatgctagtagataaactcaattaagtcaatacaaacatgcct 6987655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 25717653 - 25717748
Alignment:
Q  7 tggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaagcc 102  Q
    ||||| ||||||||||| ||||| |||||||| ||||||| |||||| ||  ||||||   ||| ||||| |||||||||  ||||||||||||||    
T  25717653 tggacaagtcataagttgtttccataagctcttccaaacaatttcacaagtgcttatgtcggtacataagctcaaataagacaatccaaacaagcc 25717748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 25896842 - 25896933
Alignment:
Q  5 tatggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaa 96  Q
    |||||||  |||||||| ||||||  |||||||||| ||||||| |||| ||  || ||||||||||||||  |||||||||| ||||||||    
T  25896842 tatggacatgtcataagctatttctataagctctcctaaacagtctcacaagtgctaatgctagtagataaactcaaataagtgaatccaaa 25896933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 14011318 - 14011391
Alignment:
Q  31 taagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaagccta 104  Q
    |||||||||||||| ||||| ||  |  ||||||  |||||||||| ||||| |||||||||||||||||||||    
T  14011318 taagctctcccaaatagttttacatgtgcttatgtaagtagataagttcaaagaagtaaatccaaacaagccta 14011391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 37575936 - 37575850
Alignment:
Q  17 ataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaagcct 103  Q
    ||||||||||| | |||| |||| |||||| | |||| ||   ||||||||| ||||||  |||||||||| |||||||||||||||    
T  37575936 ataagttattttcataagttctctcaaacaatgtcacgagagtttatgctagcagataaactcaaataagtcaatccaaacaagcct 37575850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 7368038 - 7367973
Alignment:
Q  33 agctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    |||||||||||||||| |||| |||  ||||||  ||||||||  |||||||||| ||||||||||    
T  7368038 agctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaataagtcaatccaaaca 7367973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 52388285 - 52388366
Alignment:
Q  18 taagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaa 99  Q
    |||| ||||||| |||||||||||||||| ||||||  |  ||||||| |||||||    |||||||||| |||||||||||    
T  52388285 taagctatttccataagctctcccaaacaatttcacatgtgcttatgccagtagatggactcaaataagtcaatccaaacaa 52388366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19429528 - 19429476
Alignment:
Q  1 agcttatggactagtcataagttatttccctaagctctcccaaacagtttcac 53  Q
    |||||||||||  |||||||||| | ||| |||||||||||||||||| ||||    
T  19429528 agcttatggacatgtcataagttttctccataagctctcccaaacagtctcac 19429476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 27725271 - 27725315
Alignment:
Q  4 ttatggactagtcataagttatttccctaagctctcccaaacagt 48  Q
    ||||||||  |||||||||||||||| ||||||||| ||||||||    
T  27725271 ttatggacatgtcataagttatttccataagctctctcaaacagt 27725315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 39691107 - 39691059
Alignment:
Q  59 cttatgctagtagataagatcaaataagtaaatccaaacaagcctaaaa 107  Q
    |||||||||||||||||| |||||||||| ||| |||||| ||| ||||    
T  39691107 cttatgctagtagataagctcaaataagtcaattcaaacaggccaaaaa 39691059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 46860002 - 46860066
Alignment:
Q  31 taagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaa 95  Q
    ||||||||| ||||||||||||| ||  ||||||  | |||||||| |||||||||| |||||||    
T  46860002 taagctctctcaaacagtttcacaagtgcttatgtgaatagataagttcaaataagtcaatccaa 46860066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 18331826 - 18331872
Alignment:
Q  59 cttatgctagtagataagatcaaataagtaaatccaaacaagcctaa 105  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||    
T  18331826 cttatgttagtagataagatcaaataagtcaatccaaacaagcctaa 18331872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 4055629 - 4055537
Alignment:
Q  4 ttatggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaa 96  Q
    ||||||||  |||||||||||||||  ||| |||||||||||||||| || |||  ||||  ||| ||||||| ||||||||| |||||||||    
T  4055629 ttatggacatgtcataagttatttctataaactctcccaaacagttttacaagcatttataatagcagataagttcaaataagaaaatccaaa 4055537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 14926967 - 14926897
Alignment:
Q  32 aagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaagcc 102  Q
    |||||||| |||||||| |||| ||  ||||||| |||| ||||| |||||||||| ||||||||||||||    
T  14926967 aagctctctcaaacagtctcacaagtgcttatgccagtaaataagttcaaataagtcaatccaaacaagcc 14926897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 43368658 - 43368619
Alignment:
Q  59 cttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  43368658 cttatgttagtagataagatcaaataagtcaatccaaaca 43368619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 2606138 - 2606204
Alignment:
Q  36 tctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaagcc 102  Q
    |||||||||||||||||| ||   |||||  |||||||||| || ||||||| ||||||||||||||    
T  2606138 tctcccaaacagtttcactagtgattatgtcagtagataagctcgaataagtcaatccaaacaagcc 2606204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 9700114 - 9700152
Alignment:
Q  60 ttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  9700114 ttatgctagtagataagctcaaataagttaatccaaaca 9700152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 24326109 - 24326167
Alignment:
Q  25 tttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaat 83  Q
    ||||| |||||||||||||||||| |||| ||  ||||||| |||||||||| ||||||    
T  24326109 tttccataagctctcccaaacagtctcacaagtgcttatgccagtagataagctcaaat 24326167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 40071816 - 40071898
Alignment:
Q  14 gtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaa 96  Q
    |||||||||| ||||| |||||||||||||||| | ||||  | || |||| ||| ||||||| ||||| |||| ||||||||    
T  40071816 gtcataagttgtttccataagctctcccaaacactctcacatgttcatatggtaggagataagctcaaagaagtcaatccaaa 40071898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 1664453 - 1664509
Alignment:
Q  31 taagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagt 87  Q
    |||||||||||||||||| |||| ||   ||||||||||||||||  ||||||||||    
T  1664453 taagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataagt 1664509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 7918781 - 7918713
Alignment:
Q  17 ataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataa 85  Q
    ||||||| ||| | |||||||||||||||||| |||| ||   ||||||||||||||||| | ||||||    
T  7918781 ataagttgttttcataagctctcccaaacagtctcacaagtgtttatgctagtagataagtttaaataa 7918713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 14949920 - 14949972
Alignment:
Q  1 agcttatggactagtcataagttatttccctaagctctcccaaacagtttcac 53  Q
    |||||||||||  |||||||||||||| | |||||||||| ||||||| ||||    
T  14949920 agcttatggacatgtcataagttattttcataagctctcctaaacagtctcac 14949972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 30191144 - 30191072
Alignment:
Q  14 gtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataag 86  Q
    |||||||||| ||||| |||||||||||||||||| | || ||  ||||||| | |||||||  |||||||||    
T  30191144 gtcataagttgtttccataagctctcccaaacagtctaacaagtgcttatgccaatagataaactcaaataag 30191072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 3836686 - 3836604
Alignment:
Q  14 gtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaa 96  Q
    |||||||| ||||| | |||| |||||||||||||||||| ||  |||| || |||||||||| |||||||||  ||||||||    
T  3836686 gtcataagctattttcataagttctcccaaacagtttcacaagtgcttaagccagtagataagctcaaataaggcaatccaaa 3836604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 8427070 - 8427162
Alignment:
Q  4 ttatggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaa 96  Q
    ||||||||  ||| |||||| ||||| || |||| |||||||||| |||| ||  |||||| ||||||||||| |||||||| | ||||||||    
T  8427070 ttatggacacgtcgtaagttgtttccataggctcccccaaacagtctcacaagtacttatgttagtagataagctcaaataaatcaatccaaa 8427162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 17988990 - 17988948
Alignment:
Q  60 ttatgctagtagataagatcaaataagtaaatccaaacaagcc 102  Q
    |||||| |||||||||| |||||||||| ||||||||||||||    
T  17988990 ttatgcgagtagataagctcaaataagttaatccaaacaagcc 17988948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 23214968 - 23215006
Alignment:
Q  60 ttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  23214968 ttatgctagtagataaggtcaaataagtcaatccaaaca 23215006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 39542303 - 39542221
Alignment:
Q  14 gtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaa 96  Q
    |||||||||||||||| |||||||||  |||| || || | ||  |||||||||||||||||  |||||||||| || |||||    
T  39542303 gtcataagttatttccataagctctctaaaactgtctcgcaagtgcttatgctagtagataaactcaaataagtcaacccaaa 39542221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 1418531 - 1418572
Alignment:
Q  59 cttatgctagtagataagatcaaataagtaaatccaaacaag 100  Q
    ||||||| |||||||||| |||||||||| ||||||||||||    
T  1418531 cttatgccagtagataagctcaaataagtcaatccaaacaag 1418572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 40598440 - 40598404
Alignment:
Q  62 atgctagtagataagatcaaataagtaaatccaaaca 98  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  40598440 atgctagtagataagctcaaataagtcaatccaaaca 40598404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 21002248 - 21002310
Alignment:
Q  40 ccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaagcc 102  Q
    ||||||||| |||| || |||||||| |||||||||| |||||||||  ||||||||||||||    
T  21002248 ccaaacagtctcacaagttcttatgcaagtagataagctcaaataagccaatccaaacaagcc 21002310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 5157140 - 5157221
Alignment:
Q  15 tcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaa 96  Q
    ||||||||| ||||  ||||||||||||||||||||||| ||   |||||   ||||||||| |||||||||| ||||||||    
T  5157140 tcataagttgtttctataagctctcccaaacagtttcacaagtgtttatgtccgtagataagttcaaataagtcaatccaaa 5157221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 15579538 - 15579610
Alignment:
Q  3 cttatggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataa 75  Q
    |||||||||  |||||||||| |||||  ||||||||||||||||| |  | || ||||||||||||||||||    
T  15579538 cttatggacatgtcataagttgtttccacaagctctcccaaacagtcttgcaagttcttatgctagtagataa 15579610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 28467500 - 28467584
Alignment:
Q  14 gtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    |||||||||||||||| ||| |||||||||| ||| |||  ||  || ||||||||| ||||  |||||||||| ||||||||||    
T  28467500 gtcataagttatttccataatctctcccaaatagtctcataagtgctaatgctagtaaataaactcaaataagtcaatccaaaca 28467584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 9507315 - 9507386
Alignment:
Q  31 taagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaagcc 102  Q
    |||||||||||||||||| |||| |   | |||||||||||||||| ||||||||| |||| |||| |||||    
T  9507315 taagctctcccaaacagtctcacaaatgcctatgctagtagataagctcaaataagcaaattcaaataagcc 9507386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 1662630 - 1662712
Alignment:
Q  4 ttatggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataag 86  Q
    ||||||||  |||||||||| ||||| ||||||||| |||| ||| || |  |  |||||||||||||||||| |||||||||    
T  1662630 ttatggacatgtcataagttgtttccgtaagctctcgcaaatagtctcgcatgtacttatgctagtagataagctcaaataag 1662712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 6659764 - 6659830
Alignment:
Q  31 taagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaac 97  Q
    |||||| ||||||| ||| |||| ||  |||||||||||||||||| | |||||||| |||||||||    
T  6659764 taagctatcccaaatagtctcacaagtgcttatgctagtagataagctaaaataagtcaatccaaac 6659830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 3319900 - 3319863
Alignment:
Q  63 tgctagtagataagatcaaataagtaaatccaaacaag 100  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  3319900 tgctagtagataagctcaaataagtcaatccaaacaag 3319863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 4034029 - 4033936
Alignment:
Q  5 tatggactagtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    ||||||| ||||||||||||||| | ||||||||| |||||| | |||| ||   |||||| |||||| ||| |||||| ||| ||| ||||||    
T  4034029 tatggacaagtcataagttattttcataagctctctcaaacaatctcacaagtgtttatgccagtagacaagttcaaatgagtcaatgcaaaca 4033936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 10199411 - 10199330
Alignment:
Q  14 gtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaa 95  Q
    |||||||| ||||| | | || ||||||||| ||| |||| ||  |||||| ||||||||||| |||||||||| |||||||    
T  10199411 gtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtagataagctcaaataagtcaatccaa 10199330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 15709916 - 15709977
Alignment:
Q  14 gtcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataa 75  Q
    |||||||| ||||||| |||| ||||||||||||| |||  ||  |||||||||||||||||    
T  15709916 gtcataagctatttccgtaagttctcccaaacagtctcaaaagtgcttatgctagtagataa 15709977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 32515433 - 32515360
Alignment:
Q  25 tttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 98  Q
    ||||| |||||||||||||||||| |||| ||  |||||| ||||||||||  ||||||| |  ||||||||||    
T  32515433 tttccataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaatatgctaatccaaaca 32515360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 42677 - 42757
Alignment:
Q  15 tcataagttatttccctaagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaa 96  Q
    ||||||||| |||||  ||||| ||||||||| |||||| ||  |||||||||||| ||||| ||||||| | |||||||||    
T  42677 tcataagttgtttccacaagct-tcccaaacattttcacaagtgcttatgctagtatataagctcaaataggaaaatccaaa 42757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 6894 - 6950
Alignment:
Q  31 taagctctcccaaacagtttcaccagctcttatgctagtagataagatcaaataagt 87  Q
    |||||||||||||||||| |||| ||   ||||||||||||||||  ||||||||||    
T  6894 taagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataagt 6950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University