View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_high_173 (Length: 226)

Name: NF3229_high_173
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_high_173
NF3229_high_173
[»] chr8 (8 HSPs)
chr8 (21-220)||(41001171-41001370)
chr8 (76-153)||(20672695-20672772)
chr8 (86-153)||(14482125-14482192)
chr8 (76-158)||(14929186-14929268)
chr8 (86-152)||(35534941-35535007)
chr8 (76-153)||(40280275-40280352)
chr8 (112-152)||(8629033-8629073)
chr8 (76-152)||(14949812-14949888)
[»] chr6 (10 HSPs)
chr6 (76-130)||(31583647-31583701)
chr6 (82-153)||(22742289-22742360)
chr6 (84-154)||(3169323-3169393)
chr6 (85-146)||(33259746-33259807)
chr6 (107-154)||(31461600-31461647)
chr6 (115-152)||(32578059-32578096)
chr6 (81-153)||(8470063-8470135)
chr6 (86-146)||(9027507-9027567)
chr6 (68-153)||(29274289-29274376)
chr6 (112-152)||(31668791-31668831)
[»] chr7 (13 HSPs)
chr7 (75-152)||(7244626-7244703)
chr7 (82-144)||(33894555-33894616)
chr7 (86-152)||(47004011-47004077)
chr7 (86-146)||(3610820-3610880)
chr7 (80-151)||(3241366-3241437)
chr7 (107-153)||(2223071-2223117)
chr7 (82-152)||(45593795-45593865)
chr7 (68-146)||(28340904-28340984)
chr7 (82-130)||(5006585-5006633)
chr7 (84-152)||(5276148-5276216)
chr7 (82-154)||(9527166-9527238)
chr7 (82-146)||(27481370-27481434)
chr7 (82-130)||(28178915-28178963)
[»] chr4 (7 HSPs)
chr4 (84-146)||(47970248-47970310)
chr4 (80-152)||(4191663-4191736)
chr4 (76-144)||(51044528-51044597)
chr4 (82-154)||(54325113-54325185)
chr4 (87-152)||(51555948-51556013)
chr4 (112-152)||(2980577-2980617)
chr4 (112-152)||(4663802-4663842)
[»] scaffold0428 (1 HSPs)
scaffold0428 (85-146)||(3834-3895)
[»] chr2 (12 HSPs)
chr2 (86-155)||(10143093-10143162)
chr2 (82-154)||(17952777-17952849)
chr2 (107-153)||(33197340-33197386)
chr2 (76-144)||(7282950-7283018)
chr2 (80-140)||(32098382-32098442)
chr2 (82-153)||(28803582-28803653)
chr2 (107-152)||(11393467-11393512)
chr2 (107-152)||(11410128-11410173)
chr2 (68-130)||(29430702-29430765)
chr2 (85-154)||(34339045-34339114)
chr2 (95-151)||(31461363-31461419)
chr2 (82-154)||(37053516-37053588)
[»] chr3 (13 HSPs)
chr3 (76-147)||(22667354-22667426)
chr3 (76-147)||(22723993-22724065)
chr3 (82-154)||(38462203-38462275)
chr3 (82-146)||(49586992-49587055)
chr3 (81-152)||(40122827-40122898)
chr3 (84-153)||(41028929-41028998)
chr3 (76-153)||(48528501-48528578)
chr3 (83-152)||(51278234-51278303)
chr3 (76-152)||(16790426-16790502)
chr3 (76-152)||(44284128-44284204)
chr3 (82-153)||(44374720-44374791)
chr3 (82-144)||(20192682-20192744)
chr3 (82-130)||(24887359-24887407)
[»] chr5 (12 HSPs)
chr5 (76-143)||(7096197-7096264)
chr5 (76-146)||(3951864-3951934)
chr5 (82-155)||(36539667-36539740)
chr5 (68-128)||(14295454-14295516)
chr5 (82-153)||(20982211-20982282)
chr5 (95-153)||(35095872-35095930)
chr5 (78-152)||(37618911-37618985)
chr5 (102-146)||(16863711-16863755)
chr5 (82-126)||(28586842-28586886)
chr5 (82-146)||(35135738-35135802)
chr5 (82-146)||(37063150-37063214)
chr5 (82-130)||(37968837-37968885)
[»] scaffold0590 (1 HSPs)
scaffold0590 (82-151)||(1150-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (82-151)||(2756-2825)
[»] chr1 (10 HSPs)
chr1 (86-155)||(46499934-46500003)
chr1 (85-145)||(37818395-37818455)
chr1 (76-130)||(14737775-14737829)
chr1 (95-145)||(24702192-24702242)
chr1 (76-130)||(50319238-50319292)
chr1 (76-153)||(23373360-23373437)
chr1 (82-151)||(45107548-45107616)
chr1 (76-144)||(38651479-38651547)
chr1 (82-130)||(38867909-38867957)
chr1 (76-152)||(48748653-48748728)
[»] scaffold0654 (1 HSPs)
scaffold0654 (82-154)||(6713-6785)
[»] scaffold0014 (1 HSPs)
scaffold0014 (82-154)||(116632-116704)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 41001171 - 41001370
Alignment:
Q  21 ttcagggtattttataagctcttcataatagctaatgaaaacggaataacagattatagcttatgaaaacagtctgacttcatttaatctcttgttatag 120  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41001171 ttcagggtattttataagctcttcataatagctaatgaaaacagaataacagattatagcttatgaaaacagtctgacttcatttaatctcttgttatag 41001270  T
Q  121 aaatagcttacagataagcacttatacgataagttgttcatcaacaaggcctttttccttgaccatttttcagggtgttgagctggggagaaggatatta 220  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41001271 aaatagcttacagataagcacttatacgataagctgttcatcaacaaggcctttttccttgaccatttttcagggtgttgagctggggagaaggatatta 41001370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 20672772 - 20672695
Alignment:
Q  76 atagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataag 153  Q
    ||||||||| |||||||| |||||| |||| |||| |||||||| |||  || |||| ||||||||||||| ||||||    
T  20672772 atagcttataaaaacagtttgactttattttatcttttgttatataaagggcatacacataagcacttatatgataag 20672695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 14482192 - 14482125
Alignment:
Q  86 aaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataag 153  Q
    |||||| | |||||| |||| |||| ||||||||||||||| ||| | ||||||||||||| ||||||    
T  14482192 aaaacaatttgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataag 14482125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 14929186 - 14929268
Alignment:
Q  76 atagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataagttgtt 158  Q
    |||||||||||||||||| |||||  ||||  ||| || ||||||||||||||||    ||||||||||||| ||||| ||||    
T  14929186 atagcttatgaaaacagtttgactctattttgtcttttattatagaaatagcttatgcgtaagcacttatactataagctgtt 14929268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 35534941 - 35535007
Alignment:
Q  86 aaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    |||||||| |||||| |||| | || || |||||||||||||||| | ||||||||||||| |||||    
T  35534941 aaaacagtttgactttattttaacttttattatagaaatagcttatatataagcacttatatgataa 35535007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 40280275 - 40280352
Alignment:
Q  76 atagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataag 153  Q
    |||||||||||||||| | | |||| |||| |||| ||||| |||||||| |||| | ||| ||||||||| ||||||    
T  40280275 atagcttatgaaaacaattttactttattttatcttttgttgtagaaataacttatatataggcacttatatgataag 40280352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 8629073 - 8629033
Alignment:
Q  112 ttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    ||||||||||||||||||| | ||||||||||||| |||||    
T  8629073 ttgttatagaaatagcttataaataagcacttatatgataa 8629033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 14949888 - 14949812
Alignment:
Q  76 atagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    |||||||||||||| ||| |||||  |||| |||| ||||||||||| ||||||| | ||||| |||| || |||||    
T  14949888 atagcttatgaaaagagtttgactctattttatcttttgttatagaagtagcttatacataagaacttgtatgataa 14949812  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 31583701 - 31583647
Alignment:
Q  76 atagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagctta 130  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||    
T  31583701 atagcttatgaaaacaatttgacttcattttatctcttgttatagaaatagctta 31583647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 22742360 - 22742289
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataag 153  Q
    |||||||||| | |||||| |||| |||  |||||||| |||||||||| ||||||| ||||||||||||||    
T  22742360 tatgaaaacaatttgactttattttatcctttgttatacaaatagcttatagataagaacttatacgataag 22742289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 3169323 - 3169393
Alignment:
Q  84 tgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataagt 154  Q
    ||||||||||  || || |||| |||| ||||||||||||||| ||||| ||||||||||||| |||||||    
T  3169323 tgaaaacagttcgaatttatttcatcttttgttatagaaataggttacacataagcacttatatgataagt 3169393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 33259807 - 33259746
Alignment:
Q  85 gaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttata 146  Q
    ||||||||| |||||||| || |||| |||||||| |||||||||| | |||||||||||||    
T  33259807 gaaaacagtatgacttcaatttatcttttgttataaaaatagcttatacataagcacttata 33259746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 31461647 - 31461600
Alignment:
Q  107 atctcttgttatagaaatagcttacagataagcacttatacgataagt 154  Q
    |||| ||||||||||||||||||| | |||||||||||||| ||||||    
T  31461647 atcttttgttatagaaatagcttatacataagcacttatacaataagt 31461600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 32578059 - 32578096
Alignment:
Q  115 ttatagaaatagcttacagataagcacttatacgataa 152  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  32578059 ttatagaaatagcttacacataagcacttatatgataa 32578096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 8470063 - 8470135
Alignment:
Q  81 ttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataag 153  Q
    |||||||||| || |||||| ||||  ||  |||||| ||||||||||||   ||||||||||||||||||||    
T  8470063 ttatgaaaacggtttgactttattttctcatttgttacagaaatagcttatttataagcacttatacgataag 8470135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 9027567 - 9027507
Alignment:
Q  86 aaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttata 146  Q
    |||||||| |||||| |||| ||||  | || ||||||||||||| |||||||||||||||    
T  9027567 aaaacagtttgactttattttatcttctattgtagaaatagcttatagataagcacttata 9027507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 29274289 - 29274376
Alignment:
Q  68 aacagattatagcttat--gaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataag 153  Q
    ||||| |||||||||||  ||||||| | |||||| |||| |||| ||| ||||||||||||||| | ||||||| || || ||||||    
T  29274289 aacagtttatagcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgataag 29274376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 31668791 - 31668831
Alignment:
Q  112 ttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    ||||||||||||||||||| | ||||||||||||| |||||    
T  31668791 ttgttatagaaatagcttatacataagcacttatatgataa 31668831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 7244703 - 7244626
Alignment:
Q  75 tatagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    ||||||||||||||||||| ||||||  ||| |||| ||| ||||||||||||||| | ||||||||||||| |||||    
T  7244703 tatagcttatgaaaacagtttgactttcttttatcttttgatatagaaatagcttatacataagcacttatatgataa 7244626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 33894616 - 33894555
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcactta 144  Q
    |||||||||||| |||||| |||| |||| ||||||||||||||||||| | |||||||||||    
T  33894616 tatgaaaacagtttgactt-attttatcttttgttatagaaatagcttatacataagcactta 33894555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 47004077 - 47004011
Alignment:
Q  86 aaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    |||| ||| |||||| |||| |||| ||||||||||||||||||||| |||| |||||||| |||||    
T  47004077 aaaatagtttgactttattttatctattgttatagaaatagcttacatataaacacttatatgataa 47004011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 3610820 - 3610880
Alignment:
Q  86 aaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttata 146  Q
    |||||||| || |||||||| |||| ||||| ||||||||||||| | |||||||||||||    
T  3610820 aaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagcacttata 3610880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 3241437 - 3241366
Alignment:
Q  80 cttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgata 151  Q
    |||||||||||||| |||||| ||||  | | ||||||||||||||||||  | ||||||||||||| ||||    
T  3241437 cttatgaaaacagtttgactttattttttattttgttatagaaatagcttctatataagcacttatatgata 3241366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 2223117 - 2223071
Alignment:
Q  107 atctcttgttatagaaatagcttacagataagcacttatacgataag 153  Q
    |||| ||||||||||||||||||| | |||| |||||||||||||||    
T  2223117 atcttttgttatagaaatagcttatacataaacacttatacgataag 2223071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 45593795 - 45593865
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    |||||||||||| |||||| |||| || | |||||| |||||||||||| | ||||||| ||||| |||||    
T  45593795 tatgaaaacagtttgactttattttatgttttgttacagaaatagcttatacataagcatttatatgataa 45593865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 28340904 - 28340984
Alignment:
Q  68 aacagattatagcttat--gaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttata 146  Q
    ||||| |||||||||||  || |||| | ||||||||||| |||| || ||||| ||||||| || |||||||||||||||    
T  28340904 aacagcttatagcttatatgacaacaatttgacttcatttcatcttttattataaaaatagcatatagataagcacttata 28340984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 5006585 - 5006633
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagctta 130  Q
    |||||||||||| |||||| |||| |||| ||||||||| |||||||||    
T  5006585 tatgaaaacagtttgactttattttatcttttgttataggaatagctta 5006633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 5276216 - 5276148
Alignment:
Q  84 tgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    ||||||| || |||||| || | |||| |||||||| |||||||||| | ||||||||||| |||||||    
T  5276216 tgaaaacggtttgactttatgttatcttttgttataaaaatagcttatacataagcacttaaacgataa 5276148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 9527166 - 9527238
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataagt 154  Q
    |||||||||||| |||||| |||  |||| |||||||||| ||||| || | |||||||||| || |||||||    
T  9527166 tatgaaaacagtttgactttattatatcttttgttatagatatagcgtatatataagcacttgtatgataagt 9527238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 27481370 - 27481434
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttata 146  Q
    |||| ||||||| ||||||| ||| |||  ||||||||||||||||||| | |||| ||||||||    
T  27481370 tatggaaacagtttgacttcgttttatcctttgttatagaaatagcttatacataaacacttata 27481434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 28178963 - 28178915
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagctta 130  Q
    |||||||||| | |||||| |||| |||| |||||||||||||||||||    
T  28178963 tatgaaaacaatatgactttattttatcttttgttatagaaatagctta 28178915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 47970310 - 47970248
Alignment:
Q  84 tgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttata 146  Q
    |||||| ||| ||||||||||| |||| ||||||||||||||||||| | |||||||||||||    
T  47970310 tgaaaatagtttgacttcattttatcttttgttatagaaatagcttatacataagcacttata 47970248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 4191736 - 4191663
Alignment:
Q  80 cttatgaaaacagtctgacttcattta-atctcttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    |||||||||||||| |||||| ||||  |||| ||||||||||||||||||| | ||||||||||||| |||||    
T  4191736 cttatgaaaacagtttgactttatttttatcttttgttatagaaatagcttatacataagcacttatatgataa 4191663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 51044528 - 51044597
Alignment:
Q  76 atagcttatgaaaaca-gtctgacttcatttaatctcttgttatagaaatagcttacagataagcactta 144  Q
    |||||||||||||||| || |||||| |||| |||| ||||||||||||||||||| | |||| ||||||    
T  51044528 atagcttatgaaaacaagtttgactttattttatcttttgttatagaaatagcttatacataaacactta 51044597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 54325113 - 54325185
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataagt 154  Q
    |||||||||||| |||||| |||| |||| |||| |||||||||| ||| | | ||||||||||| |||||||    
T  54325113 tatgaaaacagtttgactttattttatcttttgtaatagaaatagtttatacacaagcacttatatgataagt 54325185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 51555948 - 51556013
Alignment:
Q  87 aaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    ||||| |||||||| |||| |||| ||||||||  ||||||||| | ||||||||||||| |||||    
T  51555948 aaacaatctgactttattttatcttttgttataataatagcttatacataagcacttatatgataa 51556013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 2980577 - 2980617
Alignment:
Q  112 ttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    ||||||||||||||||||| | ||||||||||||| |||||    
T  2980577 ttgttatagaaatagcttatacataagcacttatatgataa 2980617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 4663802 - 4663842
Alignment:
Q  112 ttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    |||||||||||||| |||| | |||||||||||||||||||    
T  4663802 ttgttatagaaataacttatacataagcacttatacgataa 4663842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 3895 - 3834
Alignment:
Q  85 gaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttata 146  Q
    ||||||||| |||||||| || |||| |||||||| |||||||||||| |||||||||||||    
T  3895 gaaaacagtatgacttcagtttatcttttgttataaaaatagcttacacataagcacttata 3834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 10143162 - 10143093
Alignment:
Q  86 aaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataagtt 155  Q
    |||||||| |||||| |||| |||| |||||||||||||| |||| | |||||||||||| |||||||||    
T  10143162 aaaacagtttgacttaattttatcttttgttatagaaataacttatacataagcacttattcgataagtt 10143093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 17952777 - 17952849
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataagt 154  Q
    |||||||| ||| |||||| |||| |||| ||||||||||||||||||| | |||||| |||||| |||||||    
T  17952777 tatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgataagt 17952849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 33197340 - 33197386
Alignment:
Q  107 atctcttgttatagaaatagcttacagataagcacttatacgataag 153  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  33197340 atcttttgttatagaaatagcttatagataagcacttatatgataag 33197386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 7283018 - 7282950
Alignment:
Q  76 atagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcactta 144  Q
    |||||||||||||||||| |||||||||||  ||| || ||||| |||||||||| | |||| ||||||    
T  7283018 atagcttatgaaaacagtttgacttcattttttcttttcttataaaaatagcttatacataaacactta 7282950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 32098382 - 32098442
Alignment:
Q  80 cttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagca 140  Q
    |||||||||||| | |||||| |||| |||| ||||||||||||||||||| | |||||||    
T  32098382 cttatgaaaacactttgactttattttatcttttgttatagaaatagcttatatataagca 32098442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 28803582 - 28803653
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataag 153  Q
    ||||||| |||| |||||| |||| |||| ||||||| |||||| |||| | ||||||||||||| ||||||    
T  28803582 tatgaaatcagtttgactttattttatcttttgttatcgaaataacttatatataagcacttatatgataag 28803653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 11393467 - 11393512
Alignment:
Q  107 atctcttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    |||| ||| ||||||||||||||| ||||||||||||||| |||||    
T  11393467 atcttttgatatagaaatagcttatagataagcacttatatgataa 11393512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 11410128 - 11410173
Alignment:
Q  107 atctcttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    |||| ||| ||||||||||||||| ||||||||||||||| |||||    
T  11410128 atcttttgatatagaaatagcttatagataagcacttatatgataa 11410173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 29430765 - 29430702
Alignment:
Q  68 aacagattatagcttat--gaaaacagtctgacttcatttaatctcttgttatagaaatagctta 130  Q
    ||||| |||||||||||  ||||||||| |||||| |||||| || |||||||||||||||||||    
T  29430765 aacagcttatagcttataagaaaacagtttgactttatttaa-cttttgttatagaaatagctta 29430702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 34339114 - 34339045
Alignment:
Q  85 gaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataagt 154  Q
    |||||||||||||||| |||| |||| | | |||||||| || ||| | ||||||||||||| |||||||    
T  34339114 gaaaacagtctgactttattttatctttagctatagaaaaagtttatacataagcacttatatgataagt 34339045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 31461419 - 31461363
Alignment:
Q  95 tgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgata 151  Q
    |||||| |||| |||| ||||||||||||||||||| | |||| |||||||| ||||    
T  31461419 tgactttattttatcttttgttatagaaatagcttatatataaccacttatatgata 31461363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 37053588 - 37053516
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataagt 154  Q
    |||||||||||| |||||| |||| || |  ||||||||||||||  || | ||||||||||||| |||||||    
T  37053588 tatgaaaacagtttgactttattttattttctgttatagaaatagtctatacataagcacttatatgataagt 37053516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 22667426 - 22667354
Alignment:
Q  76 atagcttatgaaaa-cagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatac 147  Q
    |||||||||||||| |||| || |||||||| |||| ||||||||||| ||||||| | ||||||||||||||    
T  22667426 atagcttatgaaaaacagtttggcttcattttatcttttgttatagaagtagcttaaacataagcacttatac 22667354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 22724065 - 22723993
Alignment:
Q  76 atagcttatgaaaa-cagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatac 147  Q
    |||||||||||||| |||| || |||||||| |||| ||||||||||| ||||||| | ||||||||||||||    
T  22724065 atagcttatgaaaaacagtttggcttcattttatcttttgttatagaagtagcttaaacataagcacttatac 22723993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 38462275 - 38462203
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataagt 154  Q
    |||||||||||| |||||| |||| |||| ||| ||||||||||||||| | |||| |||||||| |||||||    
T  38462275 tatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagt 38462203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 49586992 - 49587055
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttata 146  Q
    |||||||||||| |||||| |||| |||| ||||||||||||||||||| || ||||||||||||    
T  49586992 tatgaaaacagtttgactttattttatcttttgttatagaaatagcttatag-taagcacttata 49587055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 40122827 - 40122898
Alignment:
Q  81 ttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    ||||||||||||| |||||| |||| |||| ||||||| ||||||||||| | ||||| ||| |||||||||    
T  40122827 ttatgaaaacagtttgactttattttatcttttgttattgaaatagcttatacataagtactgatacgataa 40122898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 41028929 - 41028998
Alignment:
Q  84 tgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataag 153  Q
    |||||||||  |||||| ||||  ||| ||||||||||||||||||| | ||||||||||||| ||||||    
T  41028929 tgaaaacagattgactttattttttcttttgttatagaaatagcttatacataagcacttatatgataag 41028998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 48528578 - 48528501
Alignment:
Q  76 atagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataag 153  Q
    |||||||||||||||||  ||  || |||| || ||||||||||||||||||||| | ||||| ||||||| ||||||    
T  48528578 atagcttatgaaaacagcttggttttattttatttcttgttatagaaatagcttatacataagtacttatatgataag 48528501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 51278234 - 51278303
Alignment:
Q  83 atgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    ||||||||||| |||||| ||||||| | ||||||||||||||||||| | || |||| ||||| |||||    
T  51278234 atgaaaacagtttgactttatttaatattttgttatagaaatagcttatacattagcaattatatgataa 51278303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 16790426 - 16790502
Alignment:
Q  76 atagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    |||||||||||||| | | ||| || |||| |||| |||||||| |||||||||| | ||||||||||||| |||||    
T  16790426 atagcttatgaaaataatttgattttattttatctgttgttataaaaatagcttatacataagcacttatatgataa 16790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 44284128 - 44284204
Alignment:
Q  76 atagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    |||||||||||||||||| ||||||  ||| || | ||||||||||||||||||| | || || ||||||| |||||    
T  44284128 atagcttatgaaaacagtttgactttgttttattttttgttatagaaatagcttatacattagtacttatatgataa 44284204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 44374720 - 44374791
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataag 153  Q
    |||||||||| | |||||| |||| |||| |||||| ||| |||||||| | ||||||||||||| ||||||    
T  44374720 tatgaaaacaatttgactttattttatcttttgttaaagatatagcttatacataagcacttatatgataag 44374791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 20192682 - 20192744
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcactta 144  Q
    ||||||||| || |||||| |||| |||| |||||||| |||||||||| | |||||||||||    
T  20192682 tatgaaaactgtttgactttattttatcttttgttatataaatagcttatacataagcactta 20192744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 24887359 - 24887407
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagctta 130  Q
    |||||| ||||| |||||| |||| |||| |||||||||||||||||||    
T  24887359 tatgaatacagtttgactttattttatctattgttatagaaatagctta 24887407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 7096197 - 7096264
Alignment:
Q  76 atagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcactt 143  Q
    ||||||||||||||  || |||||| |||| |||| ||||||||||||||||||| | ||||||||||    
T  7096197 atagcttatgaaaatggtttgactttattttatcttttgttatagaaatagcttatacataagcactt 7096264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 3951864 - 3951934
Alignment:
Q  76 atagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttata 146  Q
    |||||||||||||  ||||||| ||||||| |||| |||||||| ||||||||||   |||||||||||||    
T  3951864 atagcttatgaaagtagtctgatttcattttatcttttgttatataaatagcttattcataagcacttata 3951934  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 36539740 - 36539667
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataagtt 155  Q
    |||||||||||  |||||| |||| |||| ||| || | |||||||||||| ||||||||||||| ||||||||    
T  36539740 tatgaaaacaggttgactttattttatcttttgataaacaaatagcttacacataagcacttatatgataagtt 36539667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 14295516 - 14295454
Alignment:
Q  68 aacagattatagcttat--gaaaacagtctgacttcatttaatctcttgttatagaaatagct 128  Q
    ||||| |||||||||||  ||||||||| |||||| |||| |||| |||||||||||||||||    
T  14295516 aacagcttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaatagct 14295454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 20982211 - 20982282
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataag 153  Q
    ||||||||| |  |||||| |||| |||  ||||||||||||||||||| | ||||||||||||| ||||||    
T  20982211 tatgaaaacgggttgactttattttatcctttgttatagaaatagcttatacataagcacttatatgataag 20982282  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 35095872 - 35095930
Alignment:
Q  95 tgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataag 153  Q
    |||||| |||| |||| ||||||||||||||| ||| | ||||||||||||| ||||||    
T  35095872 tgactttattttatcttttgttatagaaatagtttaaatataagcacttatatgataag 35095930  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 37618911 - 37618985
Alignment:
Q  78 agcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    |||||||| ||||||| ||| ||||||| |||| || | |||||||||||||    |||||||||||||||||||    
T  37618911 agcttatgtaaacagtttgatttcattttatcttttataatagaaatagcttttgcataagcacttatacgataa 37618985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 16863755 - 16863711
Alignment:
Q  102 atttaatctcttgttatagaaatagcttacagataagcacttata 146  Q
    ||||||||| |||||||| |||||||||||  |||||||||||||    
T  16863755 atttaatcttttgttataaaaatagcttacgcataagcacttata 16863711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 28586842 - 28586886
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatag 126  Q
    |||||||||||| |||||| |||| |||| |||||||||||||||    
T  28586842 tatgaaaacagtttgactttattttatcttttgttatagaaatag 28586886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 35135738 - 35135802
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttata 146  Q
    |||||||| ||| |||||| |||| |||| |||||||||||||| |||| | |||| ||||||||    
T  35135738 tatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataaacacttata 35135802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 37063150 - 37063214
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttata 146  Q
    |||||||| ||| |||||| |||| |||| ||||||||||||||| ||| | ||||||| |||||    
T  37063150 tatgaaaatagtttgactttattttatcttttgttatagaaatagtttatacataagcatttata 37063214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 37968885 - 37968837
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagctta 130  Q
    |||||||||| | |||| |||||| |||| |||||||||||||||||||    
T  37968885 tatgaaaacactttgacctcattttatcttttgttatagaaatagctta 37968837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 1150 - 1219
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgata 151  Q
    ||||| || ||| |||||| |||| |||| ||||||||||||||||||| | ||||||||||||| ||||    
T  1150 tatgagaatagtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgata 1219  T

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Target: scaffold0275 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 2825 - 2756
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgata 151  Q
    ||||| || ||| |||||| |||| |||| ||||||||||||||||||| | ||||||||||||| ||||    
T  2825 tatgagaatagtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgata 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 46499934 - 46500003
Alignment:
Q  86 aaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataagtt 155  Q
    |||||| | |||||| |||| |||| || |||||||||||||||| ||||||||||||||| | ||||||    
T  46499934 aaaacaatttgactttattttatcttttcttatagaaatagcttatagataagcacttatatgttaagtt 46500003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 37818455 - 37818395
Alignment:
Q  85 gaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttat 145  Q
    ||||| ||| ||||||| ||| ||||||||||||||||||| |||| | ||||||||||||    
T  37818455 gaaaatagtttgacttcgttttatctcttgttatagaaataacttatacataagcacttat 37818395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 14737775 - 14737829
Alignment:
Q  76 atagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagctta 130  Q
    |||||||||||||||| | |||||| |||| |||| |||||||||||||| ||||    
T  14737775 atagcttatgaaaacaatttgactttattttatcttttgttatagaaataactta 14737829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 24702242 - 24702192
Alignment:
Q  95 tgacttcatttaatctcttgttatagaaatagcttacagataagcacttat 145  Q
    |||||| ||||||| | ||||||||||||||||||| ||| ||||||||||    
T  24702242 tgactttatttaattttttgttatagaaatagcttatagagaagcacttat 24702192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 50319292 - 50319238
Alignment:
Q  76 atagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagctta 130  Q
    ||||||||||||||||   |||||| |||| |||| |||||||||||||||||||    
T  50319292 atagcttatgaaaacaacttgactttattttatcttttgttatagaaatagctta 50319238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 23373360 - 23373437
Alignment:
Q  76 atagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataag 153  Q
    |||||||||||||||||  |||||| |||| |||| ||| ||||||||||||| | |  |||||| ||||| ||||||    
T  23373360 atagcttatgaaaacagattgactttattttatcttttgatatagaaatagctaatacgtaagcagttatatgataag 23373437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 45107616 - 45107548
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgata 151  Q
    |||||||| ||| |||||| |||| || | || |||||||||||||||| ||||||||||||||| ||||    
T  45107616 tatgaaaatagtttgactttattttattt-ttcttatagaaatagcttatagataagcacttatatgata 45107548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 38651479 - 38651547
Alignment:
Q  76 atagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcactta 144  Q
    |||||||||||||||| |  ||||| | || |||| ||||||||||| ||||||| | |||||||||||    
T  38651479 atagcttatgaaaacaattcgactttagtttatcttttgttatagaattagcttatacataagcactta 38651547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 38867909 - 38867957
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagctta 130  Q
    |||||||||| | |||||| ||||||||| ||| |||||||||||||||    
T  38867909 tatgaaaacattttgactttatttaatcttttggtatagaaatagctta 38867957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 48748653 - 48748728
Alignment:
Q  76 atagcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataa 152  Q
    |||||||||||||||| | | |||| |||| |||| |||| |||||||||||||| | |||||||| |||| |||||    
T  48748653 atagcttatgaaaacaatttaactttatttcatcttttgt-atagaaatagcttatacataagcacatatatgataa 48748728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 6713 - 6785
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataagt 154  Q
    |||||||||| | |||||| | || || | ||||||||||||||| ||| | ||||||||||||| |||||||    
T  6713 tatgaaaacaatttgacttaagtttattttttgttatagaaatagtttatacataagcacttatatgataagt 6785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 116632 - 116704
Alignment:
Q  82 tatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttatacgataagt 154  Q
    |||||||||| | |||||| | || || | ||||||||||||||| ||| | ||||||||||||| |||||||    
T  116632 tatgaaaacaatttgacttaagtttattttttgttatagaaatagtttatacataagcacttatatgataagt 116704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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