View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_high_174 (Length: 225)

Name: NF3229_high_174
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_high_174
NF3229_high_174
[»] chr7 (3 HSPs)
chr7 (160-218)||(17623244-17623302)
chr7 (160-218)||(16648883-16648941)
chr7 (165-202)||(17272783-17272820)
[»] chr2 (1 HSPs)
chr2 (165-202)||(39819147-39819184)
[»] chr1 (5 HSPs)
chr1 (165-202)||(28739350-28739387)
chr1 (165-202)||(6539596-6539633)
chr1 (165-202)||(9379902-9379939)
chr1 (166-202)||(9884925-9884961)
chr1 (166-202)||(50754808-50754844)
[»] chr4 (3 HSPs)
chr4 (166-218)||(43404571-43404623)
chr4 (165-202)||(6607432-6607469)
chr4 (165-202)||(31012211-31012248)
[»] chr3 (3 HSPs)
chr3 (179-218)||(46864881-46864920)
chr3 (165-202)||(20286988-20287025)
chr3 (165-202)||(31342091-31342128)
[»] chr8 (3 HSPs)
chr8 (148-222)||(7251574-7251648)
chr8 (162-203)||(7251522-7251563)
chr8 (160-217)||(18183117-18183174)
[»] chr5 (4 HSPs)
chr5 (158-218)||(3137745-3137806)
chr5 (152-201)||(9904193-9904242)
chr5 (165-202)||(29385322-29385359)
chr5 (160-212)||(5396344-5396396)


Alignment Details
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 17623302 - 17623244
Alignment:
Q  160 attggccaaccacaatattacaagtgtgcaaaataacaaaaaatcatgactttcttctc 218  Q
    |||||| ||||||||||| |||||||| |||||| |||||||||||||  |||||||||    
T  17623302 attggcaaaccacaatatcacaagtgtacaaaatgacaaaaaatcatggttttcttctc 17623244  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 16648941 - 16648883
Alignment:
Q  160 attggccaaccacaatattacaagtgtgcaaaataacaaaaaatcatgactttcttctc 218  Q
    |||||| ||||||||| | |||||||| |||||| |||||||||||||  |||||||||    
T  16648941 attggcaaaccacaatttcacaagtgtacaaaatgacaaaaaatcatggttttcttctc 16648883  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 17272820 - 17272783
Alignment:
Q  165 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 202  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  17272820 ccaaccacaatgttacaagtgtgcaaaacaacaaaaaa 17272783  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 39819184 - 39819147
Alignment:
Q  165 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 202  Q
    |||||||||||||||||||||||||||| |||||||||    
T  39819184 ccaaccacaatattacaagtgtgcaaaacaacaaaaaa 39819147  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 28739350 - 28739387
Alignment:
Q  165 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 202  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  28739350 ccaaccacaatgttacaagtgtgcaaaataacaaaaaa 28739387  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 6539596 - 6539633
Alignment:
Q  165 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 202  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  6539596 ccaaccacaatgttacaagtgtgcaaaacaacaaaaaa 6539633  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 9379939 - 9379902
Alignment:
Q  165 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 202  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  9379939 ccaaccacaatgttacaagtgtgcaaaacaacaaaaaa 9379902  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 9884961 - 9884925
Alignment:
Q  166 caaccacaatattacaagtgtgcaaaataacaaaaaa 202  Q
    |||||||||| |||||||||||||||| |||||||||    
T  9884961 caaccacaatgttacaagtgtgcaaaacaacaaaaaa 9884925  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 50754844 - 50754808
Alignment:
Q  166 caaccacaatattacaagtgtgcaaaataacaaaaaa 202  Q
    |||||||||| |||||||||||||||| |||||||||    
T  50754844 caaccacaatgttacaagtgtgcaaaacaacaaaaaa 50754808  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 43404623 - 43404571
Alignment:
Q  166 caaccacaatattacaagtgtgcaaaataacaaaaaatcatgactttcttctc 218  Q
    |||||||||| | ||||||||| ||||| | ||||||||||||||||||||||    
T  43404623 caaccacaatgtcacaagtgtgaaaaatgataaaaaatcatgactttcttctc 43404571  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 6607432 - 6607469
Alignment:
Q  165 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 202  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  6607432 ccaaccacaatgttacaagtgtgcaaaacaacaaaaaa 6607469  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 31012248 - 31012211
Alignment:
Q  165 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 202  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  31012248 ccaaccacaatattacaagtatgcaaaacaacaaaaaa 31012211  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 46864881 - 46864920
Alignment:
Q  179 acaagtgtgcaaaataacaaaaaatcatgactttcttctc 218  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  46864881 acaagtgtgaaaaatgacaaaaaatcatgactttcttctc 46864920  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 20287025 - 20286988
Alignment:
Q  165 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 202  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  20287025 ccaaccacaatgttacaagtgtgcaaaacaacaaaaaa 20286988  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 31342128 - 31342091
Alignment:
Q  165 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 202  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  31342128 ccaaccacaatgttacaagtgtgcaaaacaacaaaaaa 31342091  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 7251648 - 7251574
Alignment:
Q  148 cactttggtaatattggccaaccacaatattacaagtgtgcaaaataacaaaaaatcatgactttcttctcactc 222  Q
    ||||||||| ||||||  ||| |||||||| | |||||| |||||| | ||||||| ||||||||||||| ||||    
T  7251648 cactttggtgatattgatcaatcacaatatcataagtgtacaaaatgataaaaaattatgactttcttcttactc 7251574  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 7251522 - 7251563
Alignment:
Q  162 tggccaaccacaatattacaagtgtgcaaaataacaaaaaat 203  Q
    |||||||||||||| | ||||||||||||||| |||||||||    
T  7251522 tggccaaccacaatgtcacaagtgtgcaaaatgacaaaaaat 7251563  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 18183174 - 18183117
Alignment:
Q  160 attggccaaccacaatattacaagtgtgcaaaataacaaaaaatcatgactttcttct 217  Q
    ||||| |||||||||| | ||||| ||| ||||| | |||||||||||||||||||||    
T  18183174 attggtcaaccacaatgtcacaagcgtgtaaaatgataaaaaatcatgactttcttct 18183117  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 3137745 - 3137806
Alignment:
Q  158 atattggccaaccacaatattacaagtgtgcaaaataacaaaa-aatcatgactttcttctc 218  Q
    ||||||||||| || |  || ||||||||||||||| |||||| ||||||||||||||||||    
T  3137745 atattggccaatcatagcatcacaagtgtgcaaaatgacaaaaaaatcatgactttcttctc 3137806  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 9904193 - 9904242
Alignment:
Q  152 ttggtaatattggccaaccacaatattacaagtgtgcaaaataacaaaaa 201  Q
    ||||||||||||  |||||||||| |||||||||| ||||| ||||||||    
T  9904193 ttggtaatattgatcaaccacaatgttacaagtgtacaaaaaaacaaaaa 9904242  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 29385322 - 29385359
Alignment:
Q  165 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 202  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  29385322 ccaaccacaatgttacaagtgtgcaaaacaacaaaaaa 29385359  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 5396396 - 5396344
Alignment:
Q  160 attggccaaccacaatattacaagtgtgcaaaataacaaaaaatcatgacttt 212  Q
    ||||| |||||||||||| ||||||||||||||  | |||||||||| |||||    
T  5396396 attggtcaaccacaatatcacaagtgtgcaaaaggataaaaaatcataacttt 5396344  T

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