View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_175 (Length: 222)
Name: NF3229_high_175
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_175 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 50393521 - 50393304
Alignment:
| Q |
5 |
tcgaagaatatcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgatt |
104 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50393521 |
tcgaagaaaagcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgatt |
50393422 |
T |
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| Q |
105 |
attgcaccactaagaccaacatagcctttaagaattcccaaaaccgcgccacgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttg |
204 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50393421 |
attgcaccactaagaccaacataacctttaagaattcccaaaaccgctccgcgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttg |
50393322 |
T |
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| Q |
205 |
caaaagactgagaattag |
222 |
Q |
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|||||||||||||||||| |
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| T |
50393321 |
caaaagactgagaattag |
50393304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 50385102 - 50384885
Alignment:
| Q |
5 |
tcgaagaatatcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgatt |
104 |
Q |
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|||||||| | |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
50385102 |
tcgaagaaaagcaaacgaaatagcagcaggaagccaaccaataaacaaaatcaaagcctttgtgtcatcataataaatagcagagtaaagctgtgtgatg |
50385003 |
T |
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| Q |
105 |
attgcaccactaagaccaacatagcctttaagaattcccaaaaccgcgccacgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttg |
204 |
Q |
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| T |
50385002 |
attgcaccactgagaccaacatagcctttaagaattcccaaaaccgcgccgcgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttg |
50384903 |
T |
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| Q |
205 |
caaaagactgagaattag |
222 |
Q |
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|||||||||||||||||| |
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| T |
50384902 |
caaaagactgagaattag |
50384885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 50390231 - 50390030
Alignment:
| Q |
21 |
gaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgattattgcaccactaagac |
120 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||| || ||||||||||||| |
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| T |
50390231 |
gaaatagcggcaggaagccaacctataagcaaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatagcaccactaagac |
50390132 |
T |
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| Q |
121 |
caacatagcctttaagaattcccaaaaccgcgccacgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgagaatt |
220 |
Q |
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||| ||| ||||| |||||||||||||| || || |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
50390131 |
caagatatccttttagaattcccaaaacagctccgcgagattcggggaaattcttaacacaagtaacaagtgaaccggtgtttgcaaaagactgagaatt |
50390032 |
T |
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| Q |
221 |
ag |
222 |
Q |
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|| |
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| T |
50390031 |
ag |
50390030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 50407118 - 50406917
Alignment:
| Q |
21 |
gaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgattattgcaccactaagac |
120 |
Q |
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||||| ||||| ||||||||| | |||| |||||||||||| |||| ||||||| | ||||||||||| ||||| |||||||| || ||||||||||||| |
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| T |
50407118 |
gaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaagac |
50407019 |
T |
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| Q |
121 |
caacatagcctttaagaattcccaaaaccgcgccacgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgagaatt |
220 |
Q |
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||||||| ||||| | ||| ||||| || | ||||||| ||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
50407018 |
caacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagtaacaagtgaaccagtgtttgaaaaagactgagaatt |
50406919 |
T |
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| Q |
221 |
ag |
222 |
Q |
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|| |
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| T |
50406918 |
ag |
50406917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 24224041 - 24223903
Alignment:
| Q |
5 |
tcgaagaatatcaaaagaaatagcagcagg-aagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgat |
103 |
Q |
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|||||||| | |||||||||||||| || | |||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
24224041 |
tcgaagaaaaacaaaagaaatagcaacatgtaagccagcttatgaacaaaatcaaagcctttgtgtcatcataataaatagcagagtaaagttgtgtgat |
24223942 |
T |
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| Q |
104 |
tattgcaccactaagaccaacatagcctttaagaattcc |
142 |
Q |
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||||||||||||||||||||||| | |||||||||||| |
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| T |
24223941 |
gattgcaccactaagaccaacataacatttaagaattcc |
24223903 |
T |
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