View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_178 (Length: 221)
Name: NF3229_high_178
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_178 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 41622244 - 41622446
Alignment:
| Q |
19 |
attccttctttaattttcccctctctttcaaaattaaaatgacttcctctctcttttcatcctctgcctctctttctacttactaccatctcatcttcac |
118 |
Q |
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| T |
41622244 |
attccttctttaattttcccctctcattccaaatcaaaatgacttcctctctcttttcatcctctgcctctctttctacttactaccatctcatcttcac |
41622343 |
T |
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| Q |
119 |
agtcttggcctttctcttatcagcccttattttcttcctcacacaaaaaaccaaatccaaacaccataaccttccaccaggtccacaaggatggcctgtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41622344 |
agtcttggcctttctcttatcagcccttattttcttcctcacacaaaaaaccaaatccaaacaccataaccttccaccaggtccacaaggatggcctgtt |
41622443 |
T |
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| Q |
219 |
gtt |
221 |
Q |
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||| |
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| T |
41622444 |
gtt |
41622446 |
T |
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