View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_179 (Length: 219)
Name: NF3229_high_179
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_179 |
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| [»] scaffold1175 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 35137385 - 35137191
Alignment:
| Q |
7 |
catgtccaagaatatgtagaattcaactttctcaatggaatcagaaaactcaacgagcaggagattgaaaagtggaacaacgtcattttgactagaaata |
106 |
Q |
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| T |
35137385 |
catgcccaagcatatgtagaattcaactttctcaatggaatcagaaaactcaacgagcaggagattgaaaagtggaacaacgtcattttgactagaaata |
35137286 |
T |
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| Q |
107 |
ataggttcgcacctattgaatgagtagactatgctatttatttgaatgggaaaaaacatgttcaaacaattgagcaggatagtgcatgatgtgag |
201 |
Q |
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| T |
35137285 |
ataggttcgcacctattgaatgagtagactatgctatttatttgaatgggaaaaaacatgttcaaacaattgagcaggatagtgcatgatgtgag |
35137191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 35130152 - 35129982
Alignment:
| Q |
24 |
agaattcaactttctcaatggaatcagaaaactcaacgagcaggagattgaaaagtggaacaacgtcattttgactagaaataataggttcgcacctatt |
123 |
Q |
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| T |
35130152 |
agaattcaactttctcaatggaatcagaaaacttgacgaggaggagattgaaaagtggaacaacgtcattttgactagaaataataggttggcgcctatt |
35130053 |
T |
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| Q |
124 |
gaatgagtag---actatgctatttatttgaatgggaaaaaacatgttcaaacaattgagcaggatagtgcatgatg |
197 |
Q |
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| T |
35130052 |
gaatgagtagagtactatgctattt------atgggaaaaaacatgttcaaacaattcagcagagttgtgcatgatg |
35129982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1175 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1175
Description:
Target: scaffold1175; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 143 - 206
Alignment:
| Q |
24 |
agaattcaactttctcaatggaatcagaaa---actcaacgagcaggagattgaaaagtggaac |
84 |
Q |
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| T |
143 |
agaattcaactttctcaaaggaatcagaaaatcacttaatgaggaggagattgtaaagtggaac |
206 |
T |
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