View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_high_183 (Length: 215)

Name: NF3229_high_183
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_high_183
NF3229_high_183
[»] chr4 (11 HSPs)
chr4 (18-203)||(18724388-18724572)
chr4 (18-164)||(18699769-18699915)
chr4 (18-164)||(18679936-18680076)
chr4 (105-164)||(18655846-18655905)
chr4 (159-203)||(18699703-18699747)
chr4 (105-164)||(18731873-18731933)
chr4 (159-203)||(18655780-18655824)
chr4 (159-203)||(18731807-18731851)
chr4 (159-203)||(17989353-17989397)
chr4 (159-203)||(18073592-18073636)
chr4 (159-203)||(18679870-18679914)
[»] chr6 (15 HSPs)
chr6 (159-198)||(27605032-27605071)
chr6 (159-203)||(26655816-26655860)
chr6 (159-203)||(26761787-26761831)
chr6 (159-203)||(27718695-27718739)
chr6 (159-203)||(28780966-28781010)
chr6 (159-203)||(27698810-27698854)
chr6 (159-203)||(27725161-27725205)
chr6 (159-203)||(28786105-28786149)
chr6 (159-203)||(28792226-28792270)
chr6 (159-202)||(27338382-27338425)
chr6 (159-202)||(27399122-27399165)
chr6 (164-197)||(25071485-25071518)
chr6 (159-203)||(27229059-27229103)
chr6 (159-203)||(27427919-27427963)
chr6 (159-203)||(27611318-27611362)
[»] scaffold0349 (3 HSPs)
scaffold0349 (159-203)||(8117-8161)
scaffold0349 (159-203)||(3738-3782)
scaffold0349 (159-203)||(14671-14715)
[»] scaffold0277 (2 HSPs)
scaffold0277 (159-203)||(13948-13992)
scaffold0277 (159-203)||(4987-5031)
[»] scaffold1254 (1 HSPs)
scaffold1254 (159-203)||(233-277)
[»] scaffold0419 (1 HSPs)
scaffold0419 (159-203)||(7352-7396)
[»] chr1 (1 HSPs)
chr1 (158-202)||(268661-268705)
[»] scaffold0003 (1 HSPs)
scaffold0003 (159-203)||(59400-59444)
[»] chr8 (1 HSPs)
chr8 (166-202)||(29274087-29274123)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 18724572 - 18724388
Alignment:
18 tggtccacacggctataggaagtagtccggaagtttaacaggccannnnnnncctaagttttgtccttgttatatacaccacaaactcataccgaagact 117  Q
    ||||||||||||||||||||||| ||| ||||||||||||| |||       | ||||||||||||||||||||||||||||||||||||||||||||||    
18724572 tggtccacacggctataggaagtggtcaggaagtttaacagaccatttttgtcataagttttgtccttgttatatacaccacaaactcataccgaagact 18724473  T
118 ccacatttcagaccacaaaaacttaaactcatattctgcattctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
18724472 ccacatttcagaccacaaaaactt-aactcatattctgcattctcaattctcatggctatgcaatcaccttcctcatcctcttcat 18724388  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 18699915 - 18699769
Alignment:
18 tggtccacacggctataggaagtagtccggaagtttaacaggccannnnnnn-cctaagttttgtccttgttatatacaccacaaactcataccgaagac 116  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||        ||||||||| |||||||||||||||||||||||||||||||||||||    
18699915 tggtccacacggctataggaagtagtcaggaagtttaacagaccattttttttcctaagttt-gtccttgttatatacaccacaaactcataccgaagac 18699817  T
117 tccacatttcagaccacaaaaacttaaactcatattctgcattctcaa 164  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
18699816 tccacatttcagaccacaaaaacttaacctcatattctgcattctcaa 18699769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 18680076 - 18679936
Alignment:
18 tggtccacacggctataggaagtagtccggaagtttaacaggccannnnnnncctaagttttgtccttgttatatacaccacaaactcataccgaagact 117  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||       | |||||||| |||||||||||||           ||||| |||||||    
18680076 tggtccacacggctataggaagtagtcaggaagtttaacagaccatttttgtcataagttttctccttgttatatagtta-------catactgaagact 18679984  T
118 c-cacatttcagaccacaaaaacttaaactcatattctgcattctcaa 164  Q
    | |||||  || ||||||||||||||||||||||||||||||||||||    
18679983 ctcacatcacataccacaaaaacttaaactcatattctgcattctcaa 18679936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 18655905 - 18655846
Alignment:
105 cataccgaagactccacatttcagaccacaaaaacttaaactcatattctgcattctcaa 164  Q
    ||||| |||||||||||||  || ||||||||||||||||||||||||||||||||||||    
18655905 catactgaagactccacatcacataccacaaaaacttaaactcatattctgcattctcaa 18655846  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 18699747 - 18699703
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
18699747 tctcaattctcatggctatgcaatcaccttcctcatcctcttcat 18699703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 18731933 - 18731873
Alignment:
105 cataccgaagactc-cacatttcagaccacaaaaacttaaactcatattctgcattctcaa 164  Q
    ||||| |||||||| |||||  || ||||||||||||||||||||||||||||||||||||    
18731933 catactgaagactctcacatcacataccacaaaaacttaaactcatattctgcattctcaa 18731873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 18655824 - 18655780
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||||    
18655824 tctcaattttcatggctaggcaatcaccttcctcatcctcttcat 18655780  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 18731851 - 18731807
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||| ||| ||||||||||||||| ||||||||||||||||||||    
18731851 tctcgattttcatggctatgcaatcaccttcctcatcctcttcat 18731807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 17989397 - 17989353
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||||||||||| ||||||||||||| ||  ||||||||||    
17989397 tctcaattctcatggccatgcaattacctttctattcctcttcat 17989353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 18073592 - 18073636
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||||||||||| ||||||||||||| ||  ||||||||||    
18073592 tctcaattctcatggccatgcaattacctttctattcctcttcat 18073636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 18679914 - 18679870
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||| ||| ||||||||||||||| ||||||||||| ||||||||    
18679914 tctctattttcatggctatgcaatcaccttcctcattctcttcat 18679870  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 27605071 - 27605032
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctc 198  Q
    ||||||||||||||||||||||||||||||||||||||||    
27605071 tctcaattctcatggctatgcaattaccttcctcatcctc 27605032  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 26655816 - 26655860
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
26655816 tctcaattctcatggctatacaatcaccttcctcatcctcttcat 26655860  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 26761787 - 26761831
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
26761787 tctcaattctcatggctatacaatcaccttcctcatcctcttcat 26761831  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 27718739 - 27718695
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
27718739 tctcaattctcatggctatacaatcaccttcctcatcctcttcat 27718695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 28780966 - 28781010
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||    
28780966 tctcaattatcatggctatgcaattaccttcctcttcctcttcat 28781010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 27698854 - 27698810
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||||    
27698854 tctcaattctcatggctatacaatcaccttcctcatccacttcat 27698810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 27725205 - 27725161
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||| |||||||||| |||| ||||||||||||||||||||    
27725205 tctcaattgtcatggctatacaatcaccttcctcatcctcttcat 27725161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 28786105 - 28786149
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||||| |||||||| |||| ||||||||||||||||||||    
28786105 tctcaattcttatggctatacaatcaccttcctcatcctcttcat 28786149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 28792226 - 28792270
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||||| |||||||| |||| ||||||||||||||||||||    
28792226 tctcaattcttatggctatacaatcaccttcctcatcctcttcat 28792270  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 27338425 - 27338382
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttca 202  Q
    |||||||||||||||||||||||| || |||||| |||||||||    
27338425 tctcaattctcatggctatgcaatcactttcctcttcctcttca 27338382  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 27399165 - 27399122
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttca 202  Q
    |||||||||||||||||||||||| || |||||| |||||||||    
27399165 tctcaattctcatggctatgcaatcactttcctcttcctcttca 27399122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 25071485 - 25071518
Alignment:
164 attctcatggctatgcaattaccttcctcatcct 197  Q
    |||||||||||||||||||||||||| |||||||    
25071485 attctcatggctatgcaattaccttcttcatcct 25071518  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 27229059 - 27229103
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||| |||||||||||| |||| ||||||||| ||||||||||    
27229059 tctcaagtctcatggctatacaatcaccttcctcttcctcttcat 27229103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 27427963 - 27427919
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||||||||||| ||||||||||||| ||  ||||||||||    
27427963 tctcaattctcatggccatgcaattacctttctattcctcttcat 27427919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 27611362 - 27611318
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||| ||||||||||||||||| ||||||| || |||||||    
27611362 tctcaattttcatggctatgcaattagcttcctcttcttcttcat 27611318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 8161 - 8117
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
8161 tctcaattctcatggctatacaatcaccttcctcatcctcttcat 8117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 3782 - 3738
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||| |||||||||| |||| ||||||||||||||||||||    
3782 tctcaattgtcatggctatacaatcaccttcctcatcctcttcat 3738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 14715 - 14671
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||||    
14715 tctcaattctcatggctatacaatcaccttcctcatccacttcat 14671  T

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Target: scaffold0277 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 13992 - 13948
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||    
13992 tctcaattatcatggctatgcaattaccttcctcttcctcttcat 13948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 5031 - 4987
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||||| |||||||| |||| ||||||||||||||||||||    
5031 tctcaattcttatggctatacaatcaccttcctcatcctcttcat 4987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 277 - 233
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||    
277 tctcaattctcatggctatgcaatcacctccctcttcctcttcat 233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 7352 - 7396
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||    
7352 tctcaattctcatggctatgcaatcacctccctcttcctcttcat 7396  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 268705 - 268661
Alignment:
158 ttctcaattctcatggctatgcaattaccttcctcatcctcttca 202  Q
    |||||| |||||||||||||||||| ||||||||| |||||||||    
268705 ttctcagttctcatggctatgcaatcaccttcctcttcctcttca 268661  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 59400 - 59444
Alignment:
159 tctcaattctcatggctatgcaattaccttcctcatcctcttcat 203  Q
    |||||||||||||||| ||||||||||||| ||  ||||||||||    
59400 tctcaattctcatggccatgcaattacctttctattcctcttcat 59444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 29274123 - 29274087
Alignment:
166 tctcatggctatgcaattaccttcctcatcctcttca 202  Q
    ||||||||||||||||| ||||||||| |||||||||    
29274123 tctcatggctatgcaatcaccttcctcttcctcttca 29274087  T

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