View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_high_2 (Length: 691)

Name: NF3229_high_2
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_high_2
NF3229_high_2
[»] chr4 (1 HSPs)
chr4 (11-677)||(2608240-2608906)


Alignment Details
Target: chr4 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 11 - 677
Target Start/End: Original strand, 2608240 - 2608906
Alignment:
Q  11 acatcatcatcacttacacacttaacaccctcccaatttctcttcccacacaacaatctcacccctaattcacttggcatctcatcaaccaaacaccatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2608240 acatcatcatcacttacacacttaacaccctcccaatttctcttcccacacaacaatctcacccctaattcacttggcatctcatcaaccaaacaccatt 2608339  T
Q  111 tatccccttcactcatttcccaaacacaaacatttccaccacacgtgccaccaatcaatcccaaccctccattccatctcacaagtgttgcaaattcaag 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2608340 tatccccttcactcatttcccaaacacaaacatttccaccacacgtgccaccaatcaatcccaaccctccattccatctcacaagtgtagcaaattcaag 2608439  T
Q  211 cctatccgcaagaggtacactaaattctctccaacaattattcccaacatcaaatcccatcacattatatgccctagccgaggtaatccaatacaacgtt 310  Q
    |||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||| |||    
T  2608440 cctatctgcaagaggcacactaaattccctccaacaattattcccaacatcaaatcccattacactatatgccctagctgaggttatccaatacaatgtt 2608539  T
Q  311 gttgttcttcttccctctatacacacattctcatttggtgtccaaaccgttagcctaaccgaaaattcaaccggcatcgatccaacgattttccacgtgt 410  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2608540 gttgttcttgttccctctatacacacattctcatttggtgtccaaaccgttagcctaaccgaaaattcaaccggcatcgatccaacgattttccacgtgt 2608639  T
Q  411 caatacaagattcatatatttcaacggtcggttcatatgtggcgccaccgtgtttatcttcggacatgcccccggccacgtggattctaaaacaaggaaa 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2608640 caatacaagattcatatatttcaacggtcggttcatatgtggcgccaccgtgtttatcttcggacatgcccccggccacgtagattctaaaacaaggaaa 2608739  T
Q  511 acaccaaacatcatttgattccaaaattgtgacaattccacaagctggattagtccttgaaacattcaacttaggaaggtacttgaattgtcttgtaaaa 610  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  2608740 acaccaaacatcatttggttccaaaattgtaacaattccacaagctggatttgttcttgaaacattcaacttaggaaggtacttgaattgtcttgtaaaa 2608839  T
Q  611 gggttacaaagaaccaattgaagtgttgttgaatttgttacctttaaaaggatgaggctaccaattg 677  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  2608840 gggttacaaagaaccagttgaagtgttgttgaatttgtgaccttcaaaaggatgaggctaccaattg 2608906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University