View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3229_high_26 (Length: 431)
Name: NF3229_high_26
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 9 - 415
Target Start/End: Complemental strand, 1186455 - 1186044
Alignment:
| Q |
9 |
gagatgaaacctgtaaaacgtctccaacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaaga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1186455 |
gagatgaaacctgtaaaacgtctccaacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaaga |
1186356 |
T |
|
| Q |
109 |
aaggggaatttcggaaacaattcaagaaaccacttgttggtgaaaaaagtactcgccacagacctcaaaaataactctttaaaatttctgcacctatcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1186355 |
aaggggaatttcggaaacaattcaagaaaccacttgttggtgaaaaaagtactcgccacagacctcaaaaataactctttaaaatttctgcacctatcaa |
1186256 |
T |
|
| Q |
209 |
tatcgataatagatggtacaccgtaattttgattaccaggagaataacataaattctcaagactcgaggcatcaat-----catattttattcctgaaac |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1186255 |
tatcgataatagatggtacaccgtaattttgattaccaggagaataacataaattctcaagactcgaggcatcaatagaaacatattttattcctgaaac |
1186156 |
T |
|
| Q |
304 |
atcaacactcttgagcttttgtagaccactaattcttaaagacttcattggctcccttgtgccaccaccagaacttaacaccttacaggagtccaaagtt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1186155 |
atcaacactcttgagcttttgtagaccactaattcttaaagacttcattggctcccttgtgccaccaccagaacttagcaccttacaggagtccaaagtt |
1186056 |
T |
|
| Q |
404 |
atatattcaatc |
415 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1186055 |
atatattcaatc |
1186044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 30 - 415
Target Start/End: Complemental strand, 1181057 - 1180679
Alignment:
| Q |
30 |
ctccaacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaagaaaggggaatttcggaaacaat |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||| ||| |||| |||||| | ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1181057 |
ctccaatctcttaagtcgaacacttgaaatatcaatcttcttaggcattttacaattgtttaatttcaaactctcaagaaaagggaatttcggaaacaat |
1180958 |
T |
|
| Q |
130 |
tcaagaaaccacttgttggtgaaaaaagtactcgccacagacctcaaaaataactctttaaaatttctgcacctatcaatatcgataatagatggtacac |
229 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||| ||| |||||||||| |||||||| |||||||||| ||| || |||||||| ||| |
|
|
| T |
1180957 |
tcaagaaaccacttgtttgt---tgaagtactctccacagaccacaagtataactcttttaaatttctacacctatcaaaatcaatcttagatggtgcac |
1180861 |
T |
|
| Q |
230 |
cgtaatt-ttgattaccaggagaataacataaattctcaagactcgaggcatcaat-----catattttattcctgaaacatcaacactcttgagctttt |
323 |
Q |
| |
|
||||||| ||| | | ||||| |||||||||||||| || |||||||| ||| || |||| |||||||||||||||||||||| |||| |
|
|
| T |
1180860 |
cgtaattcttg-------gtattgtaacaaaaattctcaagacttgaagcatcaatagaaacatcttgtattgctgaaacatcaacactcttgagatttt |
1180768 |
T |
|
| Q |
324 |
gtagaccactaattcttaaagacttcattggctcccttgtgccaccaccagaacttaacaccttacaggagtccaaagttatatattcaatc |
415 |
Q |
| |
|
||||||||||||| || | | ||| ||| | ||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
1180767 |
gtagaccactaatgctcacatactccat---ataccttgtgccaccaccagaacttaacacctcacataaatccaaagttatatattcaatc |
1180679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 10202969 - 10202876
Alignment:
| Q |
52 |
cttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaagaaaggggaatttcggaaacaattcaagaaaccacttgt |
145 |
Q |
| |
|
||||||||||||||| | ||||| || |||||| | ||| | |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10202969 |
cttgaaatatcaatcttttcaggcatgtcacaagaatttaaaataaaactctcaagaaaagggaatttcggaaacaattcaagaaaccacttgt |
10202876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 49611073 - 49610963
Alignment:
| Q |
30 |
ctccaacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaagaaaggggaatttcggaaacaat |
129 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||| |||||| ||| ||||| | |||||||| ||||||| || ||||||||| |||||| |
|
|
| T |
49611073 |
ctccaacaccttaagttgaacacttgaaatattaatcgtctcagacattgtgcaattggcaaatttcaatatctcaaggaaagggaatttcaaaaacaaa |
49610974 |
T |
|
| Q |
130 |
tcaagaaacca |
140 |
Q |
| |
|
||||||||||| |
|
|
| T |
49610973 |
tcaagaaacca |
49610963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 8552662 - 8552777
Alignment:
| Q |
30 |
ctccaacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaagaaaggggaatttcggaaacaat |
129 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||| |||||| ||| || || | |||||||| |||||||| || |||||||||| ||||||| |
|
|
| T |
8552662 |
ctccaacaccttaagttgaacacttgaaatattaatcgtctcagacattgtgcatttgacaaatttcaatctctcaaggaaagggaatttcgaaaacaat |
8552761 |
T |
|
| Q |
130 |
tcaagaaaccacttgt |
145 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
8552762 |
tcaagaaaccatttgt |
8552777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 5175032 - 5174911
Alignment:
| Q |
30 |
ctccaacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaagaaaggggaatttcggaaacaat |
129 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||| |||| | || ||||| || ||||||||||||||||| || || ||||| ||||||| | |
|
|
| T |
5175032 |
ctccaacaccttaagttgaacacttgaaatattaatcttctcggacatagtgcaattgtccaatttcaaactctcaaggaaaggaaatttaggaaacagt |
5174933 |
T |
|
| Q |
130 |
tcaagaaaccacttgttggtga |
151 |
Q |
| |
|
||||||||||| |||| ||||| |
|
|
| T |
5174932 |
tcaagaaaccatttgtcggtga |
5174911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 6230616 - 6230495
Alignment:
| Q |
30 |
ctccaacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaagaaaggggaatttcggaaacaat |
129 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||||||||| | ||| ||||| || ||||||||||||||||| || | ||||| ||||| | |
|
|
| T |
6230616 |
ctccaacaccttaagttgaacacttgaaatattaatcctctcggccattgtacaatcatccaatttcaaactctcaaggaaacgaaattttctaaacagt |
6230517 |
T |
|
| Q |
130 |
tcaagaaaccacttgttggtga |
151 |
Q |
| |
|
||||||||||| |||| ||||| |
|
|
| T |
6230516 |
tcaagaaaccatttgtcggtga |
6230495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 5170831 - 5170742
Alignment:
| Q |
30 |
ctccaacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaagaaaggggaattt |
119 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||||| || | |||| ||||||| |||||||| |||||||| || |||||||| |
|
|
| T |
5170831 |
ctccaacaccttaagttgaacacttgaaatattaatcctttcggacattttgcaattttgcaatttcaacctctcaaggaaagggaattt |
5170742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University