View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_28 (Length: 429)
Name: NF3229_high_28
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 13 - 416
Target Start/End: Complemental strand, 52583398 - 52582995
Alignment:
| Q |
13 |
catcaaatggaagaagtagtatcatcttttgaaatgatagcaggtttgggagctgcaaagtgttacactgctctggcacttcaagcaatgtctaggcatt |
112 |
Q |
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| T |
52583398 |
catcaaatggaagaagtagtatcatcttttgaaatgatagcaggtttgggagctgcaaagtgttacactgctctggcacttcaagcaatgtctaggcatt |
52583299 |
T |
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| Q |
113 |
tttgtagcttaagagatgccataatgtcccaaataaatgctgagaaaagaaaactgtttcaggatgtacctaaaattaatagtggattgtctcaactgag |
212 |
Q |
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| T |
52583298 |
tttgtagcttaagagatgccataatgtcccaaataaatgctgagaaaagaaaactgtttcaggatgtacctaaaattaatagtggattgtctcaactgag |
52583199 |
T |
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| Q |
213 |
cttatttgagagagataataatagacagactagaatgtctctccaacaacttggagtcattcaaaaccaacgacaagtttggagacctattagagggtta |
312 |
Q |
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| T |
52583198 |
cttatttgagagagataataatagacagactagaatgtctctccaacaacttggagtcattcaaaaccaacgacaagtttggagacctattagagggtta |
52583099 |
T |
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| Q |
313 |
cctgaaacatctgtagcaattcttcgtgcttggctctttgagcactttcttcatccgtaagcttatatcaaaattctgtttttgtttttatgttatgtca |
412 |
Q |
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| T |
52583098 |
cctgaaacatctgtagcaattcttcgtgcttggctctttgagcactttcttcatccgtaagcttatatcaaaattctgtttttgtttttatgttatgtca |
52582999 |
T |
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| Q |
413 |
tttt |
416 |
Q |
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|||| |
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| T |
52582998 |
tttt |
52582995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 52591105 - 52591061
Alignment:
| Q |
329 |
caattcttcgtgcttggctctttgagcactttcttcatccgtaag |
373 |
Q |
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| T |
52591105 |
caatacttcgtgcttggctctttgaacattttcttaatccgtaag |
52591061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 43242935 - 43242984
Alignment:
| Q |
304 |
agagggttacctgaaacatctgtagcaattcttcgtgcttggctctttga |
353 |
Q |
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||||| |||||||||| ||||||| | |||||||||||||||||||||| |
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| T |
43242935 |
agaggattacctgaaagatctgtatctgttcttcgtgcttggctctttga |
43242984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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