View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_3 (Length: 683)
Name: NF3229_high_3
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 17 - 498
Target Start/End: Complemental strand, 45520050 - 45519569
Alignment:
| Q |
17 |
gataagacagtttctttcttaaccaaataatagcatttatgccgatttgatccttccaaattgcatttagaaacccatagaaagaatactttgacatatt |
116 |
Q |
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| T |
45520050 |
gataagacagtttctttcttaaccaaataatagcatttatgccgatttgatccttccaaattgcatttagaaacccatagaaagaatactttgacatatt |
45519951 |
T |
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| Q |
117 |
attatctctttcattcttagtcttatgtaataccgtgagctgttcttgatagtggcagttacgaaaatgatgtggtaactttgtaaattatctttttccc |
216 |
Q |
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| T |
45519950 |
attatctctttcattcttagtcttatgtaataccgtgagctgttcttgatagtggcagttacgaaaatgatatggtaactttgtaaagtatctttttccc |
45519851 |
T |
|
| Q |
217 |
ctaacatatcaaccaacacacaagaatgcacatacatgatatcatcacaggctttccattgcagtggatttgttaacctttcacctgcccttacttaatt |
316 |
Q |
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| T |
45519850 |
ctaacatatcaaccaacacacaagaatgcacatacatgatatcatcacaggctttccattgcagtggatttgttaacctttcacctgcccttacttaatt |
45519751 |
T |
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| Q |
317 |
ctccatattcacaatctgactaatatccaccaaaacttctacttaattagcttgaattaacaatatggcatattccacaccctctcaccaaaccattaca |
416 |
Q |
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| T |
45519750 |
ctccatattcacaatctgactaatatccaccaaaaattctacttaattagcttgaattaacaatatggcatattccacaccctctcaccaaaccattaca |
45519651 |
T |
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| Q |
417 |
catgatacactattattttgattaaaccaataacatacttgtattttttctattcccttatactcaaccactcaattccaac |
498 |
Q |
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| T |
45519650 |
cataatacattattcttttgattaaaccaataacatacttgtattttttctattcccttatactcaaccactcaattccaac |
45519569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 560 - 681
Target Start/End: Complemental strand, 45519507 - 45519386
Alignment:
| Q |
560 |
tgcctactttcttgttcttgaattagtaggcaattttaaacaaatccattttgcaaattccagctaacatctaactgcttcaaggtcaaacttgaatgca |
659 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45519507 |
tgcctactttcttgttcttgaattagtaggcaattttaaacaaatccattttgcaaattccagctaacatctaactgcttcaaggtcaaacttgaatgca |
45519408 |
T |
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| Q |
660 |
attattcaattgactctctgct |
681 |
Q |
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||||||||||||||||| |||| |
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| T |
45519407 |
attattcaattgactctatgct |
45519386 |
T |
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