View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_30 (Length: 419)
Name: NF3229_high_30
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 398
Target Start/End: Original strand, 41928660 - 41929051
Alignment:
| Q |
16 |
cctttcccattgcgaatgtgcatagattgatgaaaaaagctctaccaagacatgcaaagataaccgatgaaagcaaggaaattatggtgaaatatgcagc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41928660 |
cctttcccattgcgaatgtgcatagattgatgaaaaaagctctaccaagacatgcaaagataaccgatgaaagcaaggaaattatggtgaaatatgcagc |
41928759 |
T |
|
| Q |
116 |
tgaattcattagctttgttaccgctgaggctaaccattattgcaagttagattgtagaacaacaattactgctgaagatttgttagctactatgcaaaaa |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41928760 |
tgaatttattagctttgttaccgctgaggctaaccattattgcaagttagattgtagaacaacaattactgctgaagatttgttagctactatgcaaaaa |
41928859 |
T |
|
| Q |
216 |
ttgggctttgatgactatgctcagtattccttccgctacatccaactttttcgtcatggtgctcgtgtaggtcaatatgctcccccacctccacctcca- |
314 |
Q |
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| T |
41928860 |
ttgggctttgatgactatgctcaatattccttccgctacatccaactttttcgtcatggtgctcgtgtaggtcaatatgctcccccacctccacctccac |
41928959 |
T |
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| Q |
315 |
--------ccacaggattttcaagctcataattttccattggatccaaatttcatgtttgccgacccaacagaaatgtgtgcaattttagga |
398 |
Q |
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| T |
41928960 |
caccgccgccacaggattttcaagctcataattttccattggatccaaattccgtgcttaccgacccaacagaaatgggtgcaattttagga |
41929051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 163 - 398
Target Start/End: Original strand, 41938037 - 41938281
Alignment:
| Q |
163 |
tagattgtagaacaacaattactgctgaagatttgttagctactatgcaaaaattgggctttgatgactatgctcagtattccttccgctacatccaact |
262 |
Q |
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| T |
41938037 |
tagattgtagaacaacaattactgctgaagatttgttagctactatgcaaaaattgggctttgatgactatgctcggtattccttccgctacatccaact |
41938136 |
T |
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| Q |
263 |
ttttcgtcatggtgctcgtgtaggtcaatatgctcccccacctccacctcca---------ccacaggattttcaagctcataattttccattggatcca |
353 |
Q |
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| T |
41938137 |
ttttcgtcatggtgctcgtgtaggtcaatatgctcccccacctccacctccaccaccgccgccacaggattttcaagctcataattttccattggatccg |
41938236 |
T |
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| Q |
354 |
aatttcatgtttgccgacccaacagaaatgtgtgcaattttagga |
398 |
Q |
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| T |
41938237 |
aatttcatgtttgccgacccaacagaaatgggtgcaattttagga |
41938281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 71 - 396
Target Start/End: Original strand, 41910977 - 41911303
Alignment:
| Q |
71 |
aaagataaccgatgaaagcaaggaaattatggtgaaatatgcagctgaattcattagctttgttaccgctgaggctaa--ccattattgcaagttagatt |
168 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | || |||||||||||| ||||||| |
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| T |
41910977 |
aaagataaccgatgaaagcaaggaaattatggtgaac----cagctgaattcattagctttgttactgctgagaccaaaaccattattgcaatttagatt |
41911072 |
T |
|
| Q |
169 |
gtagaacaacaattactgctgaagatttgttagctactatgcaaaaattgggctttgatgactatgctcagtattccttccgctacatccaactttttcg |
268 |
Q |
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||| ||||||||||||||||||||||||||| || ||||||||||||||| ||||||| ||||||| || |||| |||||||||||||||||||| | |
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| T |
41911073 |
ataggacaacaattactgctgaagatttgttaattagtatgcaaaaattgggttttgatgtctatgctgcgtgttccctccgctacatccaacttttttg |
41911172 |
T |
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| Q |
269 |
tcatggtgctcgtgtaggtcaatatgctcccccacctccacc---tccaccacaggattttcaagctcataattttccattggatccaaatttcatgttt |
365 |
Q |
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||| ||||||| ||| ||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||| || || |
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| T |
41911173 |
ccatcgtgctcgcgtaagtcaatacgctcccccacctccaccactgccgccacaggattttcaggctcataattttccattggatccaaatttcgtgctt |
41911272 |
T |
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| Q |
366 |
gccgacccaacagaaatgtgtgcaattttag |
396 |
Q |
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| T |
41911273 |
gccgacccaacagaaatgggtgcaattttag |
41911303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 41910721 - 41910792
Alignment:
| Q |
16 |
cctttcccattgcgaatgtgcatagattgatgaaaaaagctctaccaagacatgcaaagataaccgatgaaa |
87 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
41910721 |
cctttcccattgccaatgtgcatagattgatgaaaaaagctcttcctcaacatgcaaagataaccgatgaaa |
41910792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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