View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3229_high_35 (Length: 409)
Name: NF3229_high_35
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 7675245 - 7674863
Alignment:
| Q |
11 |
caaagggccataggtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7675245 |
caaagggccataggtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggt |
7675146 |
T |
|
| Q |
111 |
gggagtggtagtgatgaagttcttgttgcaaacttcaccagacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7675145 |
gggagtggtagtgatgaagttcttgttgcaaacttcaccaaacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatga |
7675046 |
T |
|
| Q |
211 |
tttgtgttgtgttgtgactacgattatgaagatgatgtagtccaaggatatgtggttgtgtaaaacaacaacaatctatatttataaagctaagcctcga |
310 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7675045 |
tttgtgttgtgttgtgactatgattatgaagatgatgtagtccaaggatatgtggttgtgtaaaacaacaacaatctatatttataaagctaagcctcga |
7674946 |
T |
|
| Q |
311 |
tgcttgctatatttataaaggaaacgtttcctcgactgtgcaattatattggaaaattattagtaaattcttttagtactttt |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7674945 |
tgcttgctatatttataaaggaaacgtttcctcgactgtgcaattatattggaaaattattagtaaattcttttagtactttt |
7674863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 30 - 209
Target Start/End: Complemental strand, 7659599 - 7659420
Alignment:
| Q |
30 |
gccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtgggagtggtagtgatgaag |
129 |
Q |
| |
|
||||||| ||||| ||| |||||||| ||||| || | |||||| | |||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7659599 |
gccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtggtagtgatgaag |
7659500 |
T |
|
| Q |
130 |
ttcttgttgcaaacttcaccagacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatg |
209 |
Q |
| |
|
|||| ||||||| |||| | ||||||||| | ||| ||||| || |||||| |||||||||| ||||||||||||| |
|
|
| T |
7659499 |
atctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatg |
7659420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 7624068 - 7624265
Alignment:
| Q |
12 |
aaagggccataggtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtg |
111 |
Q |
| |
|
|||||||||| | ||| ||||||| ||||| ||| |||||||| ||||| || | |||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
7624068 |
aaagggccatggatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtg |
7624167 |
T |
|
| Q |
112 |
ggagtggtagtgatgaagttcttgttgcaaacttcaccagacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatg |
209 |
Q |
| |
|
| |||||||||||||||| |||| ||||||| |||| | ||||||||| | ||| ||||| || |||||| | |||||||| ||||||||||||| |
|
|
| T |
7624168 |
gaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctattgcaatgaaccatagagacatg |
7624265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University