View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_36 (Length: 409)
Name: NF3229_high_36
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 3637631 - 3637243
Alignment:
| Q |
18 |
gaagacgtgtccaataaatgttaaattggcagctaaaatggtcgccaactttgtaacaaattctcaatttgattctcgagaatatatatatct---taat |
114 |
Q |
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| T |
3637631 |
gaagacgtgtccaataaatgttaaattggcagctaaaatggtcgccgactttgtaacaaattctcaatttggttctcgagaatatatatatatctataat |
3637532 |
T |
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| Q |
115 |
tcagacttcgactctataaaacgtttctcaaattcatccttatgtaaaattctgttactaagcgttgatgtggattattggttgtcctagtcatggagga |
214 |
Q |
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| T |
3637531 |
tcagacttcgactctataaaacgtttctcaaattcatccttatgtaaaattctgttactaagcgttgatgtggattattggttgtcctagtcatggagga |
3637432 |
T |
|
| Q |
215 |
aagaatacaaaatatttgaaactataatatacaaagagcaattatgtgtccttactcttgcgtgtcttttcttctcattgtagaacacttttatcttctt |
314 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3637431 |
aagaatacaaaatatttgaaactataatacacaaagagcaattatgtgtccttact-ttgcgtgtcttttcttcttattgtagaacacttttatcttctt |
3637333 |
T |
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| Q |
315 |
atgatgtttgtgtactgtgaataaaacaattgttcatcgtcacttattttaaagtggt-gaaatgtaaatgttgttccatcttcatctct |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
3637332 |
atgatgtttgtgtactgtgaataaaacaattgttcatcgtcacttattttaaagtggtggaaatgtacatgttgttccatcttcatctct |
3637243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 36922569 - 36922529
Alignment:
| Q |
122 |
tcgactctataaaacgtttctcaaattcatccttatgtaaa |
162 |
Q |
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| T |
36922569 |
tcgactctataaaatgtttctcaaaatcatccttatttaaa |
36922529 |
T |
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