View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_4 (Length: 586)
Name: NF3229_high_4
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 30462857 - 30463159
Alignment:
| Q |
11 |
tgaataagtgaggaattggggtctaaacgccgcctttacatactgcaacgtctctgccgattaaactaagtccataggacattggtctcatatttagtgg |
110 |
Q |
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| T |
30462857 |
tgaataagtgaggaattggggtctaaacgccgtctttacatactgcaacgtctctaccgattaaactaagtccataggacattggtctcatatttagtgg |
30462956 |
T |
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| Q |
111 |
tggacaagacaacaacggaacaatatccacttttagtaaggagtgtagaaattgtcttccaattatgttattgccatagaaacaatataaacatttatag |
210 |
Q |
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| T |
30462957 |
tggacaagacaacaacggaacaatatccacttttagtaaggagtgtagaaattgtcttccaattatgttattgccatagaaacaatataaacatttatag |
30463056 |
T |
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| Q |
211 |
cggttttctgtaagtgcagtcaattttgatactggccagactttcaaaaaatgatgaggcatattcttnnnnnnnnntgataacgcattcatcccgtttc |
310 |
Q |
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| T |
30463057 |
cggttttctgtaagtgcagtcaattttgatactggcaagcctttcaaaaaatgatgaggcatattctaaaaaataaatgataacgcattcatcccctttc |
30463156 |
T |
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| Q |
311 |
att |
313 |
Q |
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| T |
30463157 |
att |
30463159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 338 - 557
Target Start/End: Original strand, 30463157 - 30463377
Alignment:
| Q |
338 |
attatcatagatactttgtctgacgtgacttaaatttctctctactctcttcatttagtttatgctcatcagtacaaataataatatgtatgtataatac |
437 |
Q |
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| T |
30463157 |
attatcatagatactttgtctgacgtgacttaaatttctctctactctcttcatttagtttatgctcatcagtacaaataataatatgtatgtataatac |
30463256 |
T |
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| Q |
438 |
aaaaagat-gctcacgagagcacttatgatgaattttcaaaaaaccctttgacaattcnnnnnnnggtcatccacaaacatgaataatcatgcaatggaa |
536 |
Q |
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| T |
30463257 |
aaaaagatagctcacgagagcacttgtgatgaattttcaaaaaaccctttgacaattcaaaaaaaggtcatccacaaacatgaataatcatgcaatggaa |
30463356 |
T |
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| Q |
537 |
acagaccaacactgcaagtag |
557 |
Q |
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| T |
30463357 |
acagaccaacactgcaagtag |
30463377 |
T |
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