View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_44 (Length: 392)
Name: NF3229_high_44
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 25669751 - 25669392
Alignment:
| Q |
19 |
caaggccctataaagtgtgttagttgtgtttcttctgattaggatctggctcacatgtttcttacttgcccatttacaatgcaagtttggattctggccg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25669751 |
caaggccctataaagtgtgttagttgtgtttcttctgattaggatttggctcacatgtttcttacttgcccatttacaatgcaagtttggattctggccg |
25669652 |
T |
|
| Q |
119 |
acctttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtctttttgttgttataacgtttcacgccagagctggatgcttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25669651 |
acctttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtctttttgttgttataacgtttcacgccagaactggatgcttg |
25669552 |
T |
|
| Q |
219 |
tatggctagtttgctttggagtttttggaagcaccactacctcaaagtgtaggatgatgttatataaatagttgctcatgtagttgatacaactcatcat |
318 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||| |
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| T |
25669551 |
tatggctagtttgctttggagtttctggaagcaccactacctcaaagtgtaggatgatgttacataaatagctgcgcatgtagttgatacaactcatcat |
25669452 |
T |
|
| Q |
319 |
ttgttggaggagtggacacttgcaaacgcaaccaccaacgatgctcgtcaaaattaaccc |
378 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25669451 |
ttgttggacgagtggacacttgcaaacgtaaccaccaacgatgctcgtcaaaattaaccc |
25669392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 384
Target Start/End: Complemental strand, 25828219 - 25827859
Alignment:
| Q |
23 |
gccctataaagtgtgttagttgtgtttcttctgattaggatctggctcacatgtttcttacttgcccatttacaatgcaagtttggattctggccgacct |
122 |
Q |
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||||| || |||||||| |||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| |||| | ||| |
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| T |
25828219 |
gccctttagagtgtgttggttgtgtttcttatgattaggatatggctcacatgttttttacttgcccatttacaatgtaagtttggattatggctgtcct |
25828120 |
T |
|
| Q |
123 |
ttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtctttttgttgttataacgtttcacgccagagctggatgcttgtatg |
222 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | ||||||||||||||||| | |||||||||| ||| |||||||||||||||| |||| | |||||||| |
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| T |
25828119 |
ttggaacgacattcaatagattgtcagtgatagtagtttggaagcaaaatcgatctttttgtttttacaacgtttcacgccagaactggctacttgtatg |
25828020 |
T |
|
| Q |
223 |
gctagtttgctttggagtttttggaagcaccactacctcaaagtgtaggatgatgttatataaatagttgctcatgtagttgatacaactcatcatttgt |
322 |
Q |
| |
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||||||||| || ||||||| ||||||| |||||||||||||||||||||||||||| | | ||||||||||| |||||||||| | |||||||||||| |
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| T |
25828019 |
gctagtttgtttcggagtttacggaagca-cactacctcaaagtgtaggatgatgttaaaaagatagttgctcaagtagttgataaagctcatcatttgt |
25827921 |
T |
|
| Q |
323 |
tggaggagtggacacttgcaaacgcaaccaccaacgatgctcgtcaaaattaaccctatgct |
384 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| |
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|
| T |
25827920 |
tggaggagtggacacttgcaaacgcaaccaccaccgatgctcgtcaaaattagccccatgct |
25827859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 32 - 374
Target Start/End: Complemental strand, 25472437 - 25472105
Alignment:
| Q |
32 |
agtgtgttagttgtgtttcttctgattaggatctggctcacatgtttcttacttgcccatttacaatgcaagtttggattctggccgacctttggaacga |
131 |
Q |
| |
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||||||||||||||||||||||| |||||||| |||||||| ||| | ||||||||||||||||| ||||||||||| ||||||| | |||||||||| | |
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| T |
25472437 |
agtgtgttagttgtgtttcttctaattaggatttggctcacttgtcttttacttgcccatttacattgcaagtttgg-ttctggctggcctttggaacaa |
25472339 |
T |
|
| Q |
132 |
cattcaacagattgtcagtgacactagtttggaagcaaaattggtctttttgttgttataacgtttcacgccagagctggatgcttgtatggctagtttg |
231 |
Q |
| |
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||||||| ||||||||| |||||||||||||| | ||||||||| ||| || ||||||| ||||| |||| | ||||||||||||||||| |
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| T |
25472338 |
cattcaatagattgtcaatgacactagtttggc---------gatctttttgtaattacaatgtttcacaccagaactggctacttgtatggctagtttg |
25472248 |
T |
|
| Q |
232 |
ctttggagtttttggaagcaccactacctcaaagtgtaggatgatgttatataaatagttgctcatgtagttgatacaactcatcatttgttggaggagt |
331 |
Q |
| |
|
||||||||||| | |||||||| || || |||| ||||| ||||||||| | | ||| ||||||| ||||||| || | |||||||||||||| |||||| |
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| T |
25472247 |
ctttggagtttatcgaagcaccgctgccacaaaatgtagaatgatgttacaaagataattgctcaagtagttggtaaagctcatcatttgttgtaggagt |
25472148 |
T |
|
| Q |
332 |
ggacacttgcaaacgcaaccaccaacgatgctcgtcaaaatta |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25472147 |
ggacacttgcaaacgcaaccaccaacgatgctcgtcaaaatta |
25472105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 25429750 - 25429567
Alignment:
| Q |
23 |
gccctataaagtgtgttagttgtgtttcttctgattaggatctggctcacatgtttcttacttgcccatttacaatgcaagtttggattctggccgacct |
122 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||| |||||||| ||| | |||||| |||||| |||| |||||||||||| ||| ||| | |
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| T |
25429750 |
gccctacaaagtgtgttagttgtgtttcttctgattaagatttggctcacgtgtcttttacttcgccatttgcaatccaagtttggattgaggctgacat |
25429651 |
T |
|
| Q |
123 |
ttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtctttttgttgttataacgtttcacgccaga |
206 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| | || || | |||||||||||||| ||||||||||| |||| |
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| T |
25429650 |
ttggaacgacattcaacagactgtcactgacactagtttgacaacagaagcgatctttttgttgttacaacgtttcacggcaga |
25429567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 24889163 - 24889345
Alignment:
| Q |
24 |
ccctataaagtgtgttagttgtgtttcttctgattaggatctggctcacatgtttcttacttgcccatttacaatgcaagtttggattctggccgacctt |
123 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||| |||||||| ||| | |||||| |||||| |||| |||||||||||| ||| ||| || |
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| T |
24889163 |
ccctacaaagtgtgttagttgtgtttcttctgattaagatttggctcacgtgtcttttacttcgccatttgcaatccaagtttggattgaggctgacatt |
24889262 |
T |
|
| Q |
124 |
tggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtctttttgttgttataacgtttcacgccaga |
206 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||| | || || | ||||| |||||||| ||||||||||| |||| |
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|
| T |
24889263 |
tggaacgacattcaacagactgtcactgacactagtttgacaacagaagcgatctttatgttgttacaacgtttcacggcaga |
24889345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 176 - 364
Target Start/End: Original strand, 25983908 - 25984096
Alignment:
| Q |
176 |
tctttttgttgttataacgtttcacgccagagctggatgcttgtatggctagtttgctttggagtttttggaagcaccactacctcaaagtgtaggatga |
275 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||||||| |||| | |||| ||| ||| |||||||||| |||||| ||||| |||||||||||| ||||| |
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| T |
25983908 |
tctttttgttattacaacgtttcacgcctgagctggctgctcgcatggttagcttgttttggagtttatggaagtaccacaacctcaaagtgtgagatga |
25984007 |
T |
|
| Q |
276 |
tgttatataaatagttgctcatgtagttgatacaactcatcatttgttggaggagtggacacttgcaaacgcaaccaccaacgatgctc |
364 |
Q |
| |
|
||||| | | | | |||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| ||||| |
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|
| T |
25984008 |
tgttacagagacaactgctcaagtagttgatacaactcatcatttgttggaagagtggacatttgcaaacgcagccaccaacgttgctc |
25984096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 41837399 - 41837475
Alignment:
| Q |
23 |
gccctataaagtgtgttagttgtgtttcttctgattaggatctggctcacatgtttcttacttgcccatttacaatg |
99 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||| ||| |||| || ||| ||||||| |||||||||||||| ||||| |
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| T |
41837399 |
gccctacaaattgtgttagttgtgattctttcgatgaggacttgactcgcatgttttttacttgcccatttgcaatg |
41837475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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