View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_51 (Length: 373)
Name: NF3229_high_51
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_51 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 51309705 - 51309936
Alignment:
| Q |
18 |
ttagtgtggctcttgtatgatgtatccatcacttaaaagccctaatttggcgttgtagagcttgaataactctatcaaacaaattgcaccaaaagaaaaa |
117 |
Q |
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| T |
51309705 |
ttagtgtggctcgtgtaggatgtatccatcacttaaaa-ccctaatttggcgttgtagagcttgaataactctatcaaacaaattgcaccaaaagaaaaa |
51309803 |
T |
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| Q |
118 |
caaattggcagcaaaatcagagataattttgtgaccagagctagaaattgaaaacaagtttacataaacatacttgctatatacaaattaacataaactt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51309804 |
caaattggcagcaaaatcagagataattttgtgaccagagctagacattgaaaacaagtttacataaacatacttgctatatacaaattaacataaactt |
51309903 |
T |
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| Q |
218 |
atgaacaatccaataatgcagtgtctgctaaat |
250 |
Q |
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| T |
51309904 |
atgaacaatccaacaatgcagtgtctgctaaat |
51309936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 245 - 362
Target Start/End: Original strand, 51310015 - 51310132
Alignment:
| Q |
245 |
ctaaataagagatgaatttgtaatctatgctaactagtgcaaatgtccccataaggttgtgccaacatatcttcctcactaatataagcagatagattaa |
344 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51310015 |
ctaaataagagatgaatttgcaatctatgctaactagtgcaaatgtccccataaggttgtgccaacatatcttcctcactaatataagcagatagattaa |
51310114 |
T |
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| Q |
345 |
catacttatcttgttcat |
362 |
Q |
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|||||||||||||||||| |
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| T |
51310115 |
catacttatcttgttcat |
51310132 |
T |
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