View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_57 (Length: 359)
Name: NF3229_high_57
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_57 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 12 - 359
Target Start/End: Original strand, 3239461 - 3239808
Alignment:
| Q |
12 |
accaccaccaccatcttcaaccggacaaacattatcatcttcaatacctcctcctccacttcctcctctacggagtatgaacaactctgttgctatgtct |
111 |
Q |
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| T |
3239461 |
accaccacctccatcttcaaccggacaaacatcatcatcttcaatacctcctcctccacttcctcctctacggagtatgaacaactctgttgctatgtct |
3239560 |
T |
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| Q |
112 |
ggtccccctcctccacctccaccaccaggcaccacacctggttccacttctacaccattagcgccgccgccacctcctccgcctggttttgcaatccaaa |
211 |
Q |
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| T |
3239561 |
ggtccccctcctccacctccaccaccaggcaccacacctggttccacttctacaccattagcgccgccaccacctcctccgcctggttttgcaatccaaa |
3239660 |
T |
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| Q |
212 |
attctctgtctaatggccctacaaatattccacccgtacccccacctccttctccttctgccaatggattatcaaactctgctgcctcaccacagtctcg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3239661 |
attctctgtctaatggccctacaaatattccacccgtacccccacctccttctccttctgccaatggattatcaaactctgctgcctcaccacagtctcg |
3239760 |
T |
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| Q |
312 |
tgcaattcctggaccacctggaactgcacctccaattcctggaccacc |
359 |
Q |
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| T |
3239761 |
tgcaattcctggaccacctggaactgcacctccaattcctggaccacc |
3239808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 359
Target Start/End: Original strand, 3239793 - 3239838
Alignment:
| Q |
314 |
caattcctggaccacctggaactgcacctccaattcctggaccacc |
359 |
Q |
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| T |
3239793 |
caattcctggaccacctgggaatgtgcctccaattcctggaccacc |
3239838 |
T |
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