View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_59 (Length: 356)
Name: NF3229_high_59
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_59 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 351
Target Start/End: Original strand, 39704399 - 39704733
Alignment:
| Q |
17 |
acattctactatcaacaatttccacaatcacttaagagcacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaa |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39704399 |
acattctattatcaacaatttccacaatcacttaagatcacatcaactgcaatgatttcaatgcttataggtattgctttttatttgagcactgctttaa |
39704498 |
T |
|
| Q |
117 |
ttgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatcaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39704499 |
ttgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgttggtcatgtttggagctatcaa |
39704598 |
T |
|
| Q |
217 |
ctttgtgtattacttactgtgctctatttcttacaagtatgaaaatgtttacgaggttatgatgttatgatgaatgttatctgtgtttggttggaataat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39704599 |
ctttgtgtattacttactgtgctctatttcttacaagtatgaaaatgtttaagaggttatgatgttatgatgaatgttatctgtgtttggttggaataat |
39704698 |
T |
|
| Q |
317 |
aataagtgataatgataatatgatcttcttctctc |
351 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
39704699 |
aataagtgataatgataatatgatcttcttctctc |
39704733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 39695490 - 39695740
Alignment:
| Q |
17 |
acattctactatcaacaatttccacaatcacttaagagcacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaa |
116 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39695490 |
acattctactaccaacaatttccacaatcacttaagaacacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaa |
39695589 |
T |
|
| Q |
117 |
ttgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatcaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||| |
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| T |
39695590 |
ttgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgttagtagtgtttggaggtatcaa |
39695689 |
T |
|
| Q |
217 |
ctttgtgtattacttactgtgctctatttcttacaagtatgaaaatgttta |
267 |
Q |
| |
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||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
39695690 |
ctttgtgtattacctattgtgctctatttcttacaagtatgaaaatgttta |
39695740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 39934623 - 39934381
Alignment:
| Q |
17 |
acattctactatcaacaatttccacaatcacttaagagcacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaa |
116 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39934623 |
acattctattatcaacaatttccacaatcacttaagagcacatcaactgcaatgatttcaatgcttataggaattgctttttacttgagcactgctttaa |
39934524 |
T |
|
| Q |
117 |
ttgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatcaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39934523 |
ttgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgttagtcgtgtttggagctatcaa |
39934424 |
T |
|
| Q |
217 |
ctttgtgtattacttactgtgctctatttcttacaagtatgaa |
259 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
39934423 |
ctttgtgtattatttactgtgctctatttcttacaaatatgaa |
39934381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 39928976 - 39928696
Alignment:
| Q |
17 |
acattctactatcaacaatttccacaatcacttaagagcacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaa |
116 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||||||||||||| |||| | |||||||||||||||| |||||||||| |||||| ||| |||| |
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|
| T |
39928976 |
acattctattatcaacaatttccacaatcgctaaagagcacatcaactgcaacggtttcaatgcttataggggttgctttttacatgagcaatgcattaa |
39928877 |
T |
|
| Q |
117 |
ttgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatcaa |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||| |||||||| ||| | | || | ||| || |
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| T |
39928876 |
ttgatcaagttcgtaggagtactgattggttacctgatgacataaatcatgggaagattgacaatgtgtactggatgttagtcctactcgggggtataaa |
39928777 |
T |
|
| Q |
217 |
ctttgtgtattacttactgtgctctatttcttacaagtatgaaaatgtttacgaggttatgatgttatgatgaatgttatc |
297 |
Q |
| |
|
|||||||||||||||| | || ||| | |||||||||||||||||||||| |||| | |||||||||||| ||||||||| |
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| T |
39928776 |
ctttgtgtattacttattttgttcttctccttacaagtatgaaaatgtttaagaggatgtgatgttatgataaatgttatc |
39928696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 297
Target Start/End: Complemental strand, 38059047 - 38058936
Alignment:
| Q |
186 |
attggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaaaatgtttacgaggttatgatgttatg |
285 |
Q |
| |
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||||||||||||| || ||||| | |||||||||| |||||||||| | || ||| | |||||||||||||||||| || |||| | | |||||||| |
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| T |
38059047 |
attggatgttggttgtatttgggggtatcaactttaggtattacttattttgttcttctgtttacaagtatgaaaatgtgtaagaggatgtaatgttatg |
38058948 |
T |
|
| Q |
286 |
atgaatgttatc |
297 |
Q |
| |
|
|| ||||||||| |
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| T |
38058947 |
ataaatgttatc |
38058936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 38061653 - 38061607
Alignment:
| Q |
17 |
acattctactatcaacaatttccacaatcacttaagagcacatcaac |
63 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
38061653 |
acattctattatcaacaatttccacagtcactgaagagcacatcaac |
38061607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 38059126 - 38059050
Alignment:
| Q |
92 |
gctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatgg |
168 |
Q |
| |
|
|||||| | ||||||||| ||||| |||||||| | | ||||| |||| |||||||||| ||||| ||||||||||| |
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|
| T |
38059126 |
gcttttaacttgagcactactttagttgaccaaatccataggattactaattggttaccagatgacataaatcatgg |
38059050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 4847144 - 4847209
Alignment:
| Q |
17 |
acattctactatcaacaatttccacaatcacttaagagcacatcaacagcaatgatttcaatgctt |
82 |
Q |
| |
|
||||| ||||| ||||||||||||||| | || |||||||||||| ||||||||||||||||| |
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|
| T |
4847144 |
acattttactacaaacaatttccacaataatttttgagcacatcaactccaatgatttcaatgctt |
4847209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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