View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_high_67 (Length: 334)

Name: NF3229_high_67
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_high_67
NF3229_high_67
[»] chr7 (13 HSPs)
chr7 (18-316)||(6350190-6350488)
chr7 (30-123)||(33387544-33387637)
chr7 (47-123)||(13072043-13072119)
chr7 (27-123)||(21420055-21420151)
chr7 (20-123)||(32198872-32198975)
chr7 (20-63)||(44832762-44832805)
chr7 (34-80)||(48614137-48614183)
chr7 (21-70)||(553569-553618)
chr7 (18-123)||(8722525-8722630)
chr7 (48-125)||(8867640-8867717)
chr7 (48-125)||(33685745-33685822)
chr7 (22-70)||(31251965-31252013)
chr7 (20-116)||(32073529-32073625)
[»] chr4 (13 HSPs)
chr4 (20-125)||(20628655-20628760)
chr4 (20-116)||(31854155-31854250)
chr4 (20-70)||(13502487-13502537)
chr4 (20-101)||(5290651-5290732)
chr4 (48-123)||(3292805-3292880)
chr4 (27-123)||(15742705-15742799)
chr4 (30-123)||(29094332-29094425)
chr4 (48-125)||(42333685-42333762)
chr4 (74-123)||(56226267-56226316)
chr4 (27-123)||(2941412-2941508)
chr4 (51-123)||(9070467-9070538)
chr4 (20-64)||(33846498-33846542)
chr4 (47-123)||(48130161-48130237)
[»] chr5 (3 HSPs)
chr5 (18-123)||(23034894-23034998)
chr5 (18-123)||(30297107-30297210)
chr5 (20-64)||(8788757-8788801)
[»] chr2 (8 HSPs)
chr2 (21-123)||(18829830-18829932)
chr2 (20-92)||(15441489-15441561)
chr2 (48-119)||(26238130-26238201)
chr2 (20-93)||(40654140-40654213)
chr2 (224-256)||(8987244-8987276)
chr2 (20-88)||(18829074-18829142)
chr2 (27-123)||(21556283-21556379)
chr2 (33-73)||(30325429-30325469)
[»] chr3 (7 HSPs)
chr3 (30-123)||(5177104-5177197)
chr3 (20-119)||(38415682-38415783)
chr3 (20-68)||(19815003-19815052)
chr3 (18-101)||(8257712-8257795)
chr3 (18-69)||(10842532-10842583)
chr3 (20-70)||(218796-218846)
chr3 (20-123)||(16094283-16094387)
[»] chr8 (3 HSPs)
chr8 (27-123)||(33947257-33947353)
chr8 (30-123)||(33532980-33533073)
chr8 (27-111)||(33534788-33534872)
[»] chr6 (3 HSPs)
chr6 (23-101)||(28932958-28933036)
chr6 (48-123)||(28996913-28996988)
chr6 (20-92)||(16793782-16793854)
[»] chr1 (2 HSPs)
chr1 (20-123)||(17745057-17745162)
chr1 (76-122)||(33658895-33658941)


Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 6350488 - 6350190
Alignment:
Q  18 ataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350488 ataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaac 6350389  T
Q  118 aattaatcgaatttttattcacttcttgtccatttcttatcactctaacgtttgtagtgattatacctctagaggtcacttgacacatcttatagaaagc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350388 aattaatcgaatttttattcacttcttgtccatttcttatcactctaacgtttgtagtgattatacctctagaggtcacttgacacatcttatagaaagc 6350289  T
Q  218 ttaccgcgaccacaaagttgtttggtttgggtgatttgatatggtttcaagctattttcacatagagaaaattcttcaatttgttgcaaagatcaaaca 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350288 ttaccgcgaccacaaagttgtttggtttgggtgatttgatatggtttcaagctattttcacatagagaaaattcttcaatttgttgcaaagatcaaaca 6350190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 33387544 - 33387637
Alignment:
Q  30 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 123  Q
    |||||||||||||| | ||| ||||||||||||| |||||| ||  |||||||| ||||||| ||||||||| |  ||||||||  ||||||||    
T  33387544 aatctcaaattacagggttataatatgtgttttttattttataggatcattgtttagacttcatgtatattacaaggtcaattttgacaattaa 33387637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 13072119 - 13072043
Alignment:
Q  47 ttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 123  Q
    ||||||||||||||||| ||||||  | |||||| |||||||||||  ||||||| || ||||||||||| ||||||    
T  13072119 ttagaatatgtgttttttattttacggggtcatttttcagacttcgcatatattacagggtcaatttcaataattaa 13072043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 21420151 - 21420055
Alignment:
Q  27 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 123  Q
    |||||| |||||||||| | ||||||| | |||||||  ||||| ||| ||||| ||||||||||  |||||||| |  ||||||||||||||||||    
T  21420151 aagaatatcaaattacagggttagaatctatgtttttttttttatagaatcatttttcagacttcacgtatattacaaggtcaatttcaacaattaa 21420055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 32198975 - 32198872
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta-aagagtcattgttcagacttcgtgtatattatagagtcaatttcaaca 118  Q
    |||||| ||||||||||||||| | | |||||||||||||||||| ||||| |||| ||||| ||||||||  | |||||||| |  |||||||| || |    
T  32198975 aaataagaagaatctcaaattatagggttagaatatgtgtttttatttttacaaga-tcatttttcagactatgcgtatattacaaggtcaatttaaata 32198877  T
Q  119 attaa 123  Q
    |||||    
T  32198876 attaa 32198872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 44832762 - 44832805
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtgttttt 63  Q
    |||||||||||||||||||||||| | ||| |||||||||||||    
T  44832762 aaataataagaatctcaaattacagggttaaaatatgtgttttt 44832805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 48614137 - 48614183
Alignment:
Q  34 tcaaattacatgtttagaatatgtgtttttaattttaaagagtcatt 80  Q
    ||||||||||| |||| |||||||||||||| ||||| |||||||||    
T  48614137 tcaaattacatatttaaaatatgtgtttttatttttacagagtcatt 48614183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 553569 - 553618
Alignment:
Q  21 aataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 70  Q
    ||||| || ||| ||||||||||||  |||||||||||||||||||||||    
T  553569 aataagaataatttcaaattacatgactagaatatgtgtttttaatttta 553618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 8722630 - 8722525
Alignment:
Q  18 ataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaac 117  Q
    |||||||||||||||||| ||||||| | | | ||||| ||||||| |||||| | |||||||  ||||||||    ||||||| || | |||||||||     
T  8722630 ataaataataagaatctcgaattacagggtcataatatatgttttttattttacaaagtcatttatcagactttacatatattacagggacaatttcaat 8722531  T
Q  118 aattaa 123  Q
    ||||||    
T  8722530 aattaa 8722525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 8867640 - 8867717
Alignment:
Q  48 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 125  Q
    |||||||| ||||||  ||||| ||| |||||| ||||||| |   ||||||||||| |||||||| |||||||||||    
T  8867640 tagaatatatgttttgtatttttaagggtcatttttcagacataaggtatattatagggtcaatttgaacaattaatc 8867717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 33685822 - 33685745
Alignment:
Q  48 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 125  Q
    |||||||| ||||||  |||||| || |||||| ||||||| |  ||||||||| || |||||||| |||||||||||    
T  33685822 tagaatatatgttttgtattttacagggtcatttttcagacataatgtatattacagggtcaatttgaacaattaatc 33685745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 31252013 - 31251965
Alignment:
Q  22 ataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 70  Q
    ||||||||||| ||||| || ||| ||||||||||||||||| ||||||    
T  31252013 ataataagaatatcaaaatatatggttagaatatgtgttttttatttta 31251965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 32073529 - 32073625
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaa 116  Q
    |||||||||||||  ||||||||||| ||| |||||||| | || |||||| |   ||||| |||||||||||  ||||||| |  |||||||||||    
T  32073529 aaataataagaattgcaaattacatgattaaaatatgtgctatttattttacatgatcatttttcagacttcgcatatattacaaggtcaatttcaa 32073625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 20628760 - 20628655
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaa 119  Q
    ||||||||||||| |||||||||| | ||  ||||||||||||| |||||| | ||||||| ||||||||||  |||||||| || ||||||||||||||    
T  20628760 aaataataagaatatcaaattacaaggttttaatatgtgttttttattttacatagtcatttttcagacttcccgtatattacagggtcaatttcaacaa 20628661  T
Q  120 ttaatc 125  Q
    | ||||    
T  20628660 tcaatc 20628655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 31854155 - 31854250
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaa 116  Q
    ||||||||||||| |||||||||| | ||| ||||| ||||||| |||||| || |||||| ||||||||||   ||||||| || |||||||||||    
T  31854155 aaataataagaatatcaaattacaggattataatatatgttttttattttacagggtcatttttcagacttcacatatattacag-gtcaatttcaa 31854250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 13502487 - 13502537
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 70  Q
    |||||| ||||||||||||||| ||||||| ||||| ||||||||||||||    
T  13502487 aaataagaagaatctcaaattatatgtttaaaatatatgtttttaatttta 13502537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 5290732 - 5290651
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 101  Q
    |||||| ||||||||||||||||| ||||| ||||||| |||||| ||||| || || ||| || ||||||| ||| |||||    
T  5290732 aaataagaagaatctcaaattacaagtttaaaatatgtctttttatttttatagcgttattttttagacttcatgtgtatta 5290651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 3292805 - 3292880
Alignment:
Q  48 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 123  Q
    |||||||| ||||||  ||||| |||||||||| ||||||| |   |||||||| ||||||||||| |||||||||    
T  3292805 tagaatatatgttttgtatttttaagagtcatttttcagacataaggtatattacagagtcaatttgaacaattaa 3292880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 15742705 - 15742799
Alignment:
Q  27 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 123  Q
    ||||||||||||  ||| | |||||||||||||||||| ||||| |  |||| | ||||||||  | |||||||| ||| ||||||| |||||||||    
T  15742705 aagaatctcaaa--acagggttagaatatgtgtttttatttttacaaggtcagttttcagactatgcgtatattacagaatcaatttgaacaattaa 15742799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 29094425 - 29094332
Alignment:
Q  30 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 123  Q
    |||||||||||||| | ||||||||||| ||||| |||||| || || ||| ||||||| | | |||| ||| || |||| ||| |||||||||    
T  29094425 aatctcaaattacagggttagaatatgtattttttattttacagggttatttttcagacattgcgtattttacagggtcattttaaacaattaa 29094332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 42333685 - 42333762
Alignment:
Q  48 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 125  Q
    |||||||| ||||||  ||||| ||| |||||| ||||||| |   |||||||| ||||||||||| |||||||||||    
T  42333685 tagaatatatgttttgtatttttaagggtcatttttcagacataaggtatattacagagtcaatttgaacaattaatc 42333762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 56226267 - 56226316
Alignment:
Q  74 agtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 123  Q
    ||||||| || ||||||||||||||||| | ||| |||||||||||||||    
T  56226267 agtcattttttagacttcgtgtatattacaaagttaatttcaacaattaa 56226316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 2941412 - 2941508
Alignment:
Q  27 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 123  Q
    |||||| ||||||||||   ||| |||||||||||||| ||||| || |||||| |||||||  ||  ||||||| |   |||||||||||||||||    
T  2941412 aagaatatcaaattacagagttaaaatatgtgtttttatttttacagggtcatttttcagaccacgcctatattacaagatcaatttcaacaattaa 2941508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 9070538 - 9070467
Alignment:
Q  51 aatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 123  Q
    |||||||||||||  |||||||| |||||| ||||||||||| |||||||| |  |||||||| |||| ||||    
T  9070538 aatatgtgtttttctttttaaag-gtcatttttcagacttcgcgtatattacatggtcaatttgaacagttaa 9070467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 33846498 - 33846542
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtgttttta 64  Q
    |||||| |||||| |||||||||||| ||| ||||||||||||||    
T  33846498 aaataagaagaatatcaaattacatggttataatatgtgttttta 33846542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 48130237 - 48130161
Alignment:
Q  47 ttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 123  Q
    ||||||||| ||||||  |||||| || |||||| ||||||| |  |||||||||||  |||||||| |||||||||    
T  48130237 ttagaatatatgttttgtattttacagggtcatttttcagacataatgtatattatatggtcaatttgaacaattaa 48130161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 23034894 - 23034998
Alignment:
Q  18 ataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaac 117  Q
    ||||||| ||| ||| || ||||||||| | | ||||||| |||||| ||||| ||||||||| |||||||||||||||||||| ||  ||||||||||     
T  23034894 ataaatagtaaaaatatcgaattacatggtcataatatgtattttta-ttttacagagtcatttttcagacttcgtgtatattacaggatcaatttcaat 23034992  T
Q  118 aattaa 123  Q
    ||||||    
T  23034993 aattaa 23034998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 30297210 - 30297107
Alignment:
Q  18 ataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaac 117  Q
    |||||||||||||||||| ||||||| | |||||||||||| |||| |||| | |  |||||| || ||||||||| ||||||| |  |||||||||||     
T  30297210 ataaataataagaatctcgaattacagggttagaatatgtgatttttatttaacaacgtcatt-ttgagacttcgtttatattaca-tgtcaatttcaat 30297113  T
Q  118 aattaa 123  Q
    ||||||    
T  30297112 aattaa 30297107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 8788757 - 8788801
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtgttttta 64  Q
    ||||||||||||||||||||||||||  || ||||||||||||||    
T  8788757 aaataataagaatctcaaattacatggctaaaatatgtgttttta 8788801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 18829830 - 18829932
Alignment:
Q  21 aataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaat 120  Q
    ||||||||||||||||||||||| | |||||||||||| |||| |||||| |  |||||| |||||||||    ||||||| |  ||||||||||| |||    
T  18829830 aataataagaatctcaaattacagggttagaatatgtgctttttattttacaatgtcatttttcagactttacatatattacatggtcaatttcaataat 18829929  T
Q  121 taa 123  Q
    |||    
T  18829930 taa 18829932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 15441561 - 15441489
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcg 92  Q
    ||||||||||||| ||||||||||   ||||||||| || |||| ||||||||| || ||| |||||||||||    
T  15441561 aaataataagaatatcaaattacagagttagaatatatggtttttattttaaagggttatttttcagacttcg 15441489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 26238201 - 26238130
Alignment:
Q  48 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaa 119  Q
    |||||||| ||||||  |||||| || |||||| ||||||| |  ||||||||||||||||||||| |||||    
T  26238201 tagaatatatgttttgtattttacagggtcatttttcagacataatgtatattatagagtcaatttgaacaa 26238130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 40654140 - 40654213
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgt 93  Q
    |||||||||  ||||||||||| | | |||||||||||| |||| | |||| ||||| ||| ||||||||||||    
T  40654140 aaataataaacatctcaaattagagggttagaatatgtgatttttagtttacagagttatttttcagacttcgt 40654213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 8987276 - 8987244
Alignment:
Q  224 cgaccacaaagttgtttggtttgggtgatttga 256  Q
    |||||||| ||||||||||||||||||||||||    
T  8987276 cgaccacatagttgtttggtttgggtgatttga 8987244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 18829142 - 18829074
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagac 88  Q
    ||||||||||||||||||||||   | ||||||||||| ||||| |||||| ||  ||||| |||||||    
T  18829142 aaataataagaatctcaaattatgaggttagaatatgtattttttattttacaggatcatttttcagac 18829074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 21556379 - 21556283
Alignment:
Q  27 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 123  Q
    ||||||||||||||||||  ||| ||||||| | ||| |||||| |  |||||| ||||||| |||||||| ||| |  |||| ||| |||||||||    
T  21556379 aagaatctcaaattacatagttataatatgtatattttattttacaaggtcatttttcagacatcgtgtattttaaatggtcagtttaaacaattaa 21556283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 30325469 - 30325429
Alignment:
Q  33 ctcaaattacatgtttagaatatgtgtttttaattttaaag 73  Q
    ||||||||||| | ||||||||||||||| |||||||||||    
T  30325469 ctcaaattacaagattagaatatgtgtttataattttaaag 30325429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 5177197 - 5177104
Alignment:
Q  30 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 123  Q
    ||||||||||||||||  |  ||||||||||||| |||||| ||| ||||| |||||||||| ||| ||||| |  |||||||| |||||||||    
T  5177197 aatctcaaattacatgggtgaaatatgtgttttttattttacagattcatttttcagacttcatgtttattacatggtcaatttgaacaattaa 5177104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 38415682 - 38415783
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtg--tttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaac 117  Q
    |||||| ||||||||||||||||| | ||| ||||||||  ||||| |||||| |  |||||| ||||||| || ||||||||| || |||||||| |||    
T  38415682 aaataagaagaatctcaaattacagggttaaaatatgtgttttttttattttacaatgtcatttttcagacatcatgtatattacagcgtcaatttgaac 38415781  T
Q  118 aa 119  Q
    ||    
T  38415782 aa 38415783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 19815003 - 19815052
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgt-gtttttaattt 68  Q
    |||||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  19815003 aaataacaagaatctcaaattacatggttagaatatgtggtttttaattt 19815052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 8257712 - 8257795
Alignment:
Q  18 ataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 101  Q
    |||||||||||||||||  ||||||||| | | ||||||||||||| |||||| || |||||| || | |||||| | ||||||    
T  8257712 ataaataataagaatcttgaattacatggtcaaaatatgtgttttttattttacagggtcattttttaaacttcgcgaatatta 8257795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 10842532 - 10842583
Alignment:
Q  18 ataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttt 69  Q
    |||||||  |||||| |||||||||||| |||||||||||||||||| ||||    
T  10842532 ataaataggaagaatatcaaattacatggttagaatatgtgtttttattttt 10842583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 218846 - 218796
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 70  Q
    |||||||||||||| ||||||||| | ||| ||||||||||||| ||||||    
T  218846 aaataataagaatcccaaattacagggttataatatgtgttttttatttta 218796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 16094387 - 16094283
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtgttttta-attttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaaca 118  Q
    |||| ||||| ||||||||||||| | ||| ||||||| |||||  |||||| || |||| | |||||||||||  |||||||  | ||||||||||| |    
T  16094387 aaattataaggatctcaaattacagggttataatatgtatttttttattttacagggtcaattttcagacttcgcatatattactgggtcaatttcaata 16094288  T
Q  119 attaa 123  Q
    |||||    
T  16094287 attaa 16094283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 33947353 - 33947257
Alignment:
Q  27 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 123  Q
    ||||||||||||||||| | ||| |||| ||| ||||| || || ||||||||| |||||||||||  ||||||| |  |||||||| |||||||||    
T  33947353 aagaatctcaaattacaaggttaaaatacgtgcttttatttgtacagagtcatttttcagacttcgcctatattacatggtcaatttgaacaattaa 33947257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 33532980 - 33533073
Alignment:
Q  30 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 123  Q
    |||||||||||||| | ||| ||| | || ||||| ||||| | ||||||| || |||||||||||| |||||||  ||||||| |||||||||    
T  33532980 aatctcaaattacaaggttataatttatgattttatttttacatagtcattttttagacttcgtgtacattataggatcaatttgaacaattaa 33533073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 33534788 - 33534872
Alignment:
Q  27 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaat 111  Q
    ||||||||||||||| |   ||| ||| |||  ||||| ||||| | ||||||| || |||||||||||||||||||| ||||||    
T  33534788 aagaatctcaaattataaagttacaatttgttattttatttttacatagtcattatttagacttcgtgtatattatagggtcaat 33534872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 28932958 - 28933036
Alignment:
Q  23 taataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 101  Q
    |||||||||| |||||||||| | ||| ||||||||||||| |||||| ||  ||||| |||||||||||  |||||||    
T  28932958 taataagaatttcaaattacagggttaaaatatgtgttttttattttacaggttcatttttcagacttcgcatatatta 28933036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 28996988 - 28996913
Alignment:
Q  48 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 123  Q
    |||||||| ||||||  ||||| |||||||||| ||||||| |   |||||||| ||||||||||| |||||||||    
T  28996988 tagaatatatgttttgtatttttaagagtcatttttcagacataaggtatattacagagtcaatttgaacaattaa 28996913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 16793854 - 16793782
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcg 92  Q
    ||||||||| | |||| ||||| |  ||||||||||||| |||| |||||| ||||| ||| |||||||||||    
T  16793854 aaataataaaactctcgaattatagatttagaatatgtgctttttattttacagagtaatttttcagacttcg 16793782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 17745057 - 17745162
Alignment:
Q  20 aaataataagaatctcaaattacatgtttagaatatgtgtt--tttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaac 117  Q
    ||||||||| ||||||||||| |||| ||||||||||| ||  ||| |||||| ||  ||||| |||||||||||  ||||||| |  |||||| ||||     
T  17745057 aaataataaaaatctcaaattgcatggttagaatatgtttttattttattttacaggttcatttttcagacttcgaatatattacatggtcaatgtcaat 17745156  T
Q  118 aattaa 123  Q
    ||||||    
T  17745157 aattaa 17745162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 33658895 - 33658941
Alignment:
Q  76 tcattgttcagacttcgtgtatattatagagtcaatttcaacaatta 122  Q
    ||||| ||| |||||||||||||||||||||||||||| ||| ||||    
T  33658895 tcatttttctgacttcgtgtatattatagagtcaatttgaacgatta 33658941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University