View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_69 (Length: 330)
Name: NF3229_high_69
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_69 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 48851465 - 48851154
Alignment:
| Q |
18 |
aagaaaaatgggaagacgatgat------gatgaaggagaagttgttgatgaagaaggagaacaaagtgatgtcacaacaacaaacaatgatatattgga |
111 |
Q |
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| T |
48851465 |
aagaaaaatgggaagacgatgataatgatgatgaaggagaagttgttgatgaagaaggagaacaaagttatgtcacaacaacaaacaatgatatattgga |
48851366 |
T |
|
| Q |
112 |
ctctacttcccttttacctctgcttttattagaacagaacttgttcaatgaagatgaagaactcaacactcttttctccaaagaaaagattcaacaagaa |
211 |
Q |
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| T |
48851365 |
ctctacttcccttttacctctgcttttattagaacagaacttgttcaataaagatgaagaactcaacactcttttctccaaagaaaagattcaacaagaa |
48851266 |
T |
|
| Q |
212 |
acttattatgacgatctgaaaaatgtgatgaactttgactcactctctcaacctcgtcgtgaagctgttgaatggatgcttaaagtcaatgctcattatg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48851265 |
acttattatgacgatctgaaaaatgtgatgaactttgactcactcactcaacctcgtcgtgaagctgttgaatggatgcttaaagtcaatgctcattatg |
48851166 |
T |
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| Q |
312 |
gtttctctgctc |
323 |
Q |
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|||||||||||| |
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| T |
48851165 |
gtttctctgctc |
48851154 |
T |
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