View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_7 (Length: 531)
Name: NF3229_high_7
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 85 - 313
Target Start/End: Original strand, 8169775 - 8170003
Alignment:
| Q |
85 |
caaaatgacatcaacagaacaggattggtcgattggaatattttcaattgaagaaggaatgaaaaggatataaagaaagggaatggactgacaatgacaa |
184 |
Q |
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| T |
8169775 |
caaaatgacatcaacagaacatgattggtcgattggaatattttcaactgaagaaggaatgaaaaggatataaagaaagggaatggactgacaatgacaa |
8169874 |
T |
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| Q |
185 |
tgggtatatgaattatcgaagaactattttcggagaagtggaaaatcatacttgttttcatttagaagttggatcgatgacatatctgatgggtttcagc |
284 |
Q |
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| T |
8169875 |
tgggtatatgaattatcgaagaactattttcggagaagtggaaaatcatacttgttttcagttagaagttggatcggtgacatatctgatgggtttcagc |
8169974 |
T |
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| Q |
285 |
caagaagattgtagagggagaacgttttt |
313 |
Q |
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| T |
8169975 |
caagaagattgtagagggagaactttttt |
8170003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 8169658 - 8169709
Alignment:
| Q |
35 |
gtaaaacttatctaaggtgagtataacttcactttaaccaaagcaagctgca |
86 |
Q |
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| T |
8169658 |
gtaaaacttatctaaggtgagtataacttcactttaaccaaagcaagctgca |
8169709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8167898 - 8167941
Alignment:
| Q |
1 |
caacataagagatatttgttattatattttaatggtaaaactta |
44 |
Q |
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| T |
8167898 |
caacataagagatatttgttattatattttaatggtaaaactta |
8167941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 311 - 396
Target Start/End: Original strand, 8172461 - 8172544
Alignment:
| Q |
311 |
tttatattcccgtcaatatttctatgtacaannnnnnnnnngttgtaggttttagaacctagaaaag-tattaatatattagttttt |
396 |
Q |
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| T |
8172461 |
tttatattcccgtcaatatttctatgtacaatttttttt---ttgtaggttttagaacctagaaaagttattaatatattagttttt |
8172544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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