View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_78 (Length: 312)
Name: NF3229_high_78
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_78 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 37033028 - 37032736
Alignment:
| Q |
1 |
ttgctacgtaaaaattacgttggaaagagaggttttcaatagaaggaagtcaacatgaagttgcataacctgccaaataaacgagtggttttgattttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37033028 |
ttgctacgtaaaaattacgttggaaagagaggttttcaatagaaggaagtcaacatgaagttgcataacctgccaaataaacg-gtggttttgattttga |
37032930 |
T |
|
| Q |
101 |
ggaaaatgtcagtctgtagcaatagcccatagttttaactaaattgaaggtacaacaaccataagacgacgatgtgtgacaatgaaatgtgtaccgaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37032929 |
ggaaaatgtcagtctgtagcaatagcccatagttttaactaaattgaaggcacaacaaccataagacgacgatgcgtgacaatgaaatgtgtaccgaaac |
37032830 |
T |
|
| Q |
201 |
caagtggcataatatgtctttgttgttagggtatagtatgtgatgtgaaatcacttaaactataacgacgaaataaggaactcattgtaaataa |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37032829 |
caagtggcataatatgtctttgttgttagggtatagtatgtgatgtgaaatcacttaaactataacgacgaaataaggaactcattgtaaataa |
37032736 |
T |
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