View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_79 (Length: 312)
Name: NF3229_high_79
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_79 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 33046743 - 33046441
Alignment:
| Q |
1 |
caattcaacacctctaaaaaatt-ctaaatgaatctgacaaataattctacaatattttccttggaaaatatatctacaatttgaatggtcctttgtcca |
99 |
Q |
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| T |
33046743 |
caattcaacacctctaaaaaatttctaaatgaatctcacaaataattctacaatatttttcttggaaaatatatctacaatttgaatggtcctttgtcca |
33046644 |
T |
|
| Q |
100 |
ataagttgtagtggggacttccttatccaagaaggcctagtttccaaaggtacaaaaatgttctctcttgggacaatattgaaccccagacctggattcc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
33046643 |
ataagttgtagtggggacttccttatccaagaaggcctagtttccaaaggtacaaaaatgttctctcttgggacaatattgaaccctagacctggatctc |
33046544 |
T |
|
| Q |
200 |
ctgttgtaactgttttacacagtttcacgtaatggttgatctcagtcattgaacattgatccaacggtttagattgttcagtcagttttaacacactttc |
299 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33046543 |
ctgttgtaactgttttacgcagtttcacg--atggttgatctcagtcattgaacattgatccaacggtttagattgttctgtcagttttaacacactttg |
33046446 |
T |
|
| Q |
300 |
atctc |
304 |
Q |
| |
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||||| |
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|
| T |
33046445 |
atctc |
33046441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 298
Target Start/End: Complemental strand, 11235156 - 11235046
Alignment:
| Q |
188 |
gacctggattccctgttgtaactgttttacacagtttcacgtaatggttgatctcagtcattgaacattgatccaacggtttagattgttcagtcagttt |
287 |
Q |
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||||||||| || || |||||||| || || |||||||||| | |||| |||||||| |||||||||| |||||||| ||||||||||||| |||||||| |
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| T |
11235156 |
gacctggatcccttgctgtaactgcttcacgcagtttcacgcagtggtcgatctcagacattgaacatggatccaacagtttagattgttctgtcagttt |
11235057 |
T |
|
| Q |
288 |
taacacacttt |
298 |
Q |
| |
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| T |
11235056 |
tcacacacttt |
11235046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 11235307 - 11235243
Alignment:
| Q |
232 |
tggttgatctcagtcattgaacattgatccaacggtttagattgttcagtcagttttaacacact |
296 |
Q |
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|||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||||| |
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| T |
11235307 |
tggtcgatctcagtcattgaacatggatccaacagtttagaatgttcagtcagttttcacacact |
11235243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 304
Target Start/End: Complemental strand, 11234936 - 11234855
Alignment:
| Q |
223 |
ttcacgtaatggttgatctcagtcattgaacattgatccaacggtttagattgttcagtcagttttaacacactttcatctc |
304 |
Q |
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| T |
11234936 |
ttcacgcagtggtcgatctcagccaatgaacatggatccaacagtttagattgttatgtcagttttcacacactttaatctc |
11234855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 11234776 - 11234712
Alignment:
| Q |
188 |
gacctggattccctgttgtaactgttttacacagtttcacgtaatggttgatctcagtcattgaa |
252 |
Q |
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|||||| || ||||||||||||||||| | ||||||||||| |||| |||||||| ||||||| |
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| T |
11234776 |
gacctgaatcccctgttgtaactgtttcatgtagtttcacgtagtggtcgatctcagccattgaa |
11234712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 37753162 - 37753094
Alignment:
| Q |
200 |
ctgttgtaactgttttacacagtttcacgtaatggttgatctcagtcattgaacattgatccaacggtt |
268 |
Q |
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|||||||||||| || ||||||||||||||| |||| |||||||| ||| ||||| ||||||||||||| |
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| T |
37753162 |
ctgttgtaactgcttcacacagtttcacgtagtggtcgatctcagccatagaacaatgatccaacggtt |
37753094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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