View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_80 (Length: 311)
Name: NF3229_high_80
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_80 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 6752976 - 6752691
Alignment:
| Q |
18 |
tccataagaacaacaagtaaaggtttatatcttttaataaggactcgggtttgtctcttaccctccttattaacggcaccccttataattccaactaaga |
117 |
Q |
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| T |
6752976 |
tccataagaacaacaagtaaaggtttatatcttttaataaggactcgggttcgtctcttaccctccttattaacggcaccccttata-ttccaactaaga |
6752878 |
T |
|
| Q |
118 |
atagataaatcattaaaactagtcataagtaccttagggaaatataggaatgtagtgcacctcagtctacgtcgtttccatagccatggagttaacattt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6752877 |
atagataaatcattaaaactagtcataagtaccttagtgaaataaaggaatgtagtgcacctcagtctacgtcgtttccatagccatggagttgacattt |
6752778 |
T |
|
| Q |
218 |
gcactagccttggaaccatcattatttatgtggacaccacttgtattattaatttcatgcttattacacatgttggatcctttgctt |
304 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6752777 |
gcactagccttggaaccatccttatttatgtggacaccacttgtattattaatttcatgcttattacacatgttggatcctttgctt |
6752691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 1811558 - 1811761
Alignment:
| Q |
18 |
tccataagaacaacaagtaaaggtttatatcttttaataaggactcgggtttgtctcttaccctccttattaacggcaccccttataattccaactaaga |
117 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1811558 |
tccataagaacaacaagtaaaggtttatatcttttaataaggactcgggtttgtctcttaccctccttattaacggcaccccttata-ttccaactaaga |
1811656 |
T |
|
| Q |
118 |
atagataaatcattaaaactagtcataagtaccttagggaaatataggaatgtagtgcacctcagtctacgtcgtttccatagccatggagttaacattt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1811657 |
atagataaatcattaaaactagtcataagtaccttagtgaaatataggaatgtagtgcacctcagtctacgtcgtttccatagccatggaattaacattt |
1811756 |
T |
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| Q |
218 |
gcact |
222 |
Q |
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||||| |
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|
| T |
1811757 |
gcact |
1811761 |
T |
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