View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_high_82 (Length: 308)

Name: NF3229_high_82
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_high_82
NF3229_high_82
[»] chr7 (8 HSPs)
chr7 (12-290)||(8348379-8348659)
chr7 (177-279)||(8364403-8364505)
chr7 (125-269)||(7915429-7915577)
chr7 (15-116)||(8409804-8409904)
chr7 (60-116)||(7915315-7915371)
chr7 (23-86)||(8442755-8442818)
chr7 (177-258)||(8442627-8442710)
chr7 (114-148)||(8409728-8409762)
[»] scaffold0060 (3 HSPs)
scaffold0060 (133-279)||(65260-65407)
scaffold0060 (39-116)||(69161-69238)
scaffold0060 (177-258)||(69243-69326)
[»] scaffold1769 (2 HSPs)
scaffold1769 (177-258)||(322-405)
scaffold1769 (39-86)||(230-277)
[»] chr2 (1 HSPs)
chr2 (135-226)||(24857408-24857499)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 8348659 - 8348379
Alignment:
Q  12 tagcataggagaattcgaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8348659 tagcataggagaattcgaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagc 8348560  T
Q  112 attggtaatgaatatggctaccctaacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8348559 attggtaatgaatatggctaccctaacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatg 8348460  T
Q  212 ttcggaactctacaattc--gacagttgaaagaatgcacttgaaagaggttacgaataaactttcaaaaatgtggaatttc 290  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8348459 ttcggaactctacaattcgagacagttgaaagaatacacttgaaagaggttacgaataaactttcaaaaatgtggaatttc 8348379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 8364505 - 8364403
Alignment:
Q  177 tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattcgacagttgaaagaatgcacttgaaagaggttacgaataaactttcaa 276  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  8364505 tatgagttggtcttgagattttgaaatttagcatgttcggcactctacaattcgacagttgaaagaatacacttgatagaggttaagaataaactttcaa 8364406  T
Q  277 aaa 279  Q
    |||    
T  8364405 aaa 8364403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 125 - 269
Target Start/End: Original strand, 7915429 - 7915577
Alignment:
Q  125 atggctaccctaacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatgttcggaactc--t 222  Q
    |||| |||| ||||||||||||||||||||||||| |||| ||||||| |  ||||||||||||||||||||||||| |||||||||||| | ||||  |    
T  7915429 atggttaccttaacaggaacaactaatggagtgagaataaaaacttggaaggtatgagttggtcttgagattttgaaatttagcatgttctgcactctat 7915528  T
Q  223 acaattc--gacagttgaaagaatgcacttgaaagaggttacgaataaa 269  Q
    |||||||  |||| ||||||| || ||||||| |||||||| |||||||    
T  7915529 acaattcaagacaattgaaaggatacacttgatagaggttaagaataaa 7915577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 8409904 - 8409804
Alignment:
Q  15 cataggagaattcgaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcatt 114  Q
    |||||||||||| ||||||||||||||||||||||||||| ||| ||||||| ||| || | ||||||||||||| ||||||||||||||||||||||||    
T  8409904 cataggagaatttgaagaaattgccagtggtctgtgatacgctgtttagtac-aaaggaagccaaataccggctatagcgatgctaaatttagcagcatt 8409806  T
Q  115 gg 116  Q
    ||    
T  8409805 gg 8409804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 7915315 - 7915371
Alignment:
Q  60 ttagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcattgg 116  Q
    |||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||    
T  7915315 ttagtacaaaatcatgccaaataccggctatagcgatgctaaatttagcagcattgg 7915371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 8442818 - 8442755
Alignment:
Q  23 aattcgaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccgg 86  Q
    |||| ||||||||  |||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  8442818 aatttgaagaaatatccagtgttctatgatacactgtttagtacaaaatgatgtcaaataccgg 8442755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 8442710 - 8442627
Alignment:
Q  177 tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattc--gacagttgaaagaatgcacttgaaagagg 258  Q
    |||||||||||||| |||||||||| ||||||||||| || |||||| |||||  || ||||||||||||  |||||| |||||    
T  8442710 tatgagttggtcttcagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagagg 8442627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 8409762 - 8409728
Alignment:
Q  114 tggtaatgaatatggctaccctaacaggaacaact 148  Q
    ||||||||||||||| |||||||||||||||||||    
T  8409762 tggtaatgaatatggttaccctaacaggaacaact 8409728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 279
Target Start/End: Original strand, 65260 - 65407
Alignment:
Q  133 cctaacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattc--g 230  Q
    ||||| |||||||||||||||||||||  ||| ||||||  | | | |||||||| ||||||||||||| | ||||||||| || |||||||||||   |    
T  65260 cctaataggaacaactaatggagtgagattaaaaacttgaaaaaaa-gagttggttttgagattttgaaatatagcatgttaggcactctacaatttaag 65358  T
Q  231 acagttgaaagaatgcacttgaaagaggttacgaataaactttcaaaaa 279  Q
    ||||||||||||||  |||||| |||||||| |||||||||||||||||    
T  65359 acagttgaaagaataaacttgatagaggttaagaataaactttcaaaaa 65407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 69161 - 69238
Alignment:
Q  39 cagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcattgg 116  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||||| || || |||||||||||||||||||||||    
T  69161 cagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtgatgctaaatttagcagcattgg 69238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 69243 - 69326
Alignment:
Q  177 tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattc--gacagttgaaagaatgcacttgaaagagg 258  Q
    ||||||||||||||||||||||||| ||||||||||| || |||||| |||||  || ||||||||||||  |||||| |||||    
T  69243 tatgagttggtcttgagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagagg 69326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1769 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold1769
Description:

Target: scaffold1769; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 322 - 405
Alignment:
Q  177 tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattc--gacagttgaaagaatgcacttgaaagagg 258  Q
    ||||||||||||||||||||||||| ||||||||||| || |||||| |||||  || ||||||||||||  |||||| |||||    
T  322 tatgagttggtcttgagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagagg 405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1769; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 230 - 277
Alignment:
Q  39 cagtggtctgtgatacactgattagtacaaaatgatgtcaaataccgg 86  Q
    ||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  230 cagtgttctatgatacactgtttagtacaaaatgatgtcaaataccgg 277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 24857408 - 24857499
Alignment:
Q  135 taacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatgttcggaactctacaa 226  Q
    ||||||||||||||||||||||||| |||| ||| |||||  ||  |||||||||| ||||||||||  ||||  |||| || |||||||||    
T  24857408 taacaggaacaactaatggagtgagaataaaaacatggcaggtaaaagttggtcttaagattttgaaaattagtctgttaggcactctacaa 24857499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University