View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_83 (Length: 308)
Name: NF3229_high_83
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_83 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 4278239 - 4278521
Alignment:
| Q |
10 |
ggtaacatcgaaatccaacgccaacaccaatccaccaaacgaggatggcatgctgccatgttcatcataggtgagtgaaaaagaaccttctcttatcttg |
109 |
Q |
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| T |
4278239 |
ggtaacgtcgaaatccaacgccaacaccaatccaccaaaagaggatggcatgctgccatgttcatcataggtgagtgaaaaagaaccttctcttatcttg |
4278338 |
T |
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| Q |
110 |
cnnnnnnnnnnnnnnnnnnnnnnnaaagattttgtacaatttgcacaaatctttgacgttttggtgaagacaaatttttcgatataatttgagtttgaat |
209 |
Q |
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| T |
4278339 |
cttttttattttattttattttataaagatttcgtacaatttgcacaaatctttgacgttttggtaaagacaaattgttcgatataatttaagtttgaat |
4278438 |
T |
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| Q |
210 |
tctgagtgaaacaagatttgatcagactttatttatctgtataccgaattttgatttttaagacgaattttttcggagaacta |
292 |
Q |
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| T |
4278439 |
tctggatgaaacaagatttgatcagactttatttatctatataccaaatttcggtttttaagacgaattttaccggagaacta |
4278521 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 33381658 - 33381594
Alignment:
| Q |
176 |
aagacaaatttttcgatataatttgagtttgaattctgagtgaaacaagatttgatcagacttta |
240 |
Q |
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| T |
33381658 |
aagacaaatttttcaagagaatccgagtttgatttctgattgaaacaatattttatcagacttta |
33381594 |
T |
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