View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_84 (Length: 305)
Name: NF3229_high_84
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_84 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 4 - 291
Target Start/End: Original strand, 5272845 - 5273133
Alignment:
| Q |
4 |
aatattttcatatatcctcgcatcaaataattgattgtataactctatgatgtgatgaaagcaaaataattcatgcatacacatcttaatctacctgcat |
103 |
Q |
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| T |
5272845 |
aatattttcatatatcctcgcatcaaataattgattgtataactctatgatgtgatgaaagcaaaataattcatgcatacacatcttaatctacctgcat |
5272944 |
T |
|
| Q |
104 |
tcctttaatcatataataataatattattgtcagtgtcaaatcttctgtctcacaactaattaatcaaatttttcct-nnnnnnnnnctaattaatcaga |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5272945 |
tcctttaatcatataataataatattattgtcagtgtcaaatcttctgtctcacaactaattaatcaaatttttcctaaaagaaaaactaattaatcaga |
5273044 |
T |
|
| Q |
203 |
attatcatataatgcactagcctagtttacctttctatgtccctgacaggtagtgtttgctacctatttgatatgaaaaatgttgtaac |
291 |
Q |
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| T |
5273045 |
attatcatataatgcactagcctagtttacctttctatgtccctgacaggtagtgtttgctacctatttgatatgaaaaatgttgtaac |
5273133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 5268598 - 5268643
Alignment:
| Q |
25 |
atcaaataattgattgtataactctatgatgtgatgaaagcaaaat |
70 |
Q |
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| T |
5268598 |
atcaaataattgatagttgaactctatgatgtgatgaaagcaaaat |
5268643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 31152919 - 31152874
Alignment:
| Q |
25 |
atcaaataattgattgtataactctatgatgtgatgaaagcaaaat |
70 |
Q |
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| T |
31152919 |
atcaaataattgatagtttaactctgtgatgtgatgaaagcaaaat |
31152874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 34286235 - 34286190
Alignment:
| Q |
25 |
atcaaataattgattgtataactctatgatgtgatgaaagcaaaat |
70 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||||| |||||| |
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| T |
34286235 |
atcaaataattgatagtttaactctatgatgtgatgaaatcaaaat |
34286190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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