View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3229_high_89 (Length: 295)
Name: NF3229_high_89
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_89 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 277
Target Start/End: Original strand, 17173704 - 17173970
Alignment:
| Q |
11 |
catcatcaccattgaacatcattggaacatactcacaaattttgttctctggagtagtcaaaccttcagttctaaaatcactctctgagctttcaaaatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17173704 |
catcatcaccattgaacatcattggaacatactcacaaattttgttctctggagtagtcaaaccttcagttctaaaatcactctttgagctttcaaaatt |
17173803 |
T |
|
| Q |
111 |
cagttgatttttaatatccatcatgctcgtagaatacgtcatcggctccttttcaacttccttagcatcggtgacttccattatgtatttcagaagaagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17173804 |
cagttgatttttaatatccatcatgctcgtagaatacgtcatcggctccttttcaacttccttagcatcggtgacttccattatgtatttcagaagaagt |
17173903 |
T |
|
| Q |
211 |
attccctttgaactcttacctcggttcttcctcttggcatttaagcggcgcttagtggcgttccagt |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||| |
|
|
| T |
17173904 |
attccctttgaactcttacctcggttcttcctcttgggattttggcgacgcttagtggcattccagt |
17173970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 13644052 - 13643788
Alignment:
| Q |
11 |
catcatcaccattgaacatcattggaacatactcacaaattttgttctctggagtagtcaaaccttcagttctaaaatcactctctgagctttcaaaatt |
110 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| ||| ||||| | |||||||||||||||||||||| |||||||||||| || |||||| |||| |
|
|
| T |
13644052 |
catcatcatcattgaacatcattggcacatagccaccaatttcatcttctggagtagtcaaaccttcagagaaaaaatcactctcagaactttcataatt |
13643953 |
T |
|
| Q |
111 |
cagttgatttttaatatccatcatgctcgtagaatacgtcatcggctccttttcaacttccttagcatcggtgacttccattatgtatttcagaagaagt |
210 |
Q |
| |
|
| ||||| |||| |||||||||| ||||| |||||| |||||||||||||| ||| ||| |||||||||||||||||||||| ||| ||| |
|
|
| T |
13643952 |
tggctgattcccgatattcatcatgctcagagaattagtcatcatctccttttcaactttcttggcacaagtgacttccattatgtatttcaaaagcagt |
13643853 |
T |
|
| Q |
211 |
attccctttgaactcttacctcggttcttcctcttggcatttaagcggcgcttagtggcgttcca |
275 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||| || | || |||||||||||||||||| |
|
|
| T |
13643852 |
gttccctttgaactgttacctcgattctttttcttggctttcaggcagcgcttagtggcgttcca |
13643788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 13706501 - 13706235
Alignment:
| Q |
11 |
catcatcaccattgaacatcattggaacatactcacaaattttgttctctggagtagtcaaaccttcagttctaaaatcactctctgagctttcaaaatt |
110 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| ||| |||| | |||||||||||||||||||||| |||||||||||| || |||||| |||| |
|
|
| T |
13706501 |
catcatcatcattgaacatcattggcacatagccaccaattccatcttctggagtagtcaaaccttcagagaaaaaatcactctcagaactttcataatt |
13706402 |
T |
|
| Q |
111 |
cagttgatttttaatatccatcatgctcgtagaatacgtcatcggctccttttcaacttccttagcatcggtgacttccattatgtatttcagaagaagt |
210 |
Q |
| |
|
| ||||| |||| ||||||||||| ||||| ||||| |||||||||||||| ||| ||| || ||||||||||||||||||| ||| ||| |
|
|
| T |
13706401 |
tggctgattcccgatattcatcatgctcggagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagcagt |
13706302 |
T |
|
| Q |
211 |
attccctttgaactcttacctcggttcttcctcttggcatttaagcggcgcttagtggcgttccagt |
277 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||| || ||| |||||||||| |||||||| |
|
|
| T |
13706301 |
gttccctttgaactgttacctcgattctttttcttggctttctggcgtcgcttagtggtgttccagt |
13706235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 277
Target Start/End: Original strand, 34653473 - 34653739
Alignment:
| Q |
11 |
catcatcaccattgaacatcattggaacatactcacaaattttgttctctggagtagtcaaaccttcagttctaaaatcactctctgagctttcaaaatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||| | | |||| || ||||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
34653473 |
catcatcaccattgaacatcattggagcatacccatcaatttcctcatttggattaaccaaaccttcagagctaaaatcactctccgagctttcaaagtt |
34653572 |
T |
|
| Q |
111 |
cagttgatttttaatatccatcatgctcgtagaatacgtcatcggctccttttcaacttccttagcatcggtgacttccattatgtatttcagaagaagt |
210 |
Q |
| |
|
| ||||| || | ||||| ||||||||||| ||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| || ||| |
|
|
| T |
34653573 |
tgggtgattcccaaatttcatcacgctcgtagaattcgtcatcagctccttttcagcttccttagcatcattgacttccattatgtatttcaagagtagt |
34653672 |
T |
|
| Q |
211 |
attccctttgaactcttacctcggttcttcctcttggcatttaagcggcgcttagtggcgttccagt |
277 |
Q |
| |
|
||||||||||||| |||| || ||||| ||||| | ||| ||||||||| ||||||||||||| |
|
|
| T |
34653673 |
tttccctttgaactattactccgattctttctcttagtattatggcggcgcttggtggcgttccagt |
34653739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University