View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_high_9 (Length: 488)
Name: NF3229_high_9
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 59 - 470
Target Start/End: Original strand, 3148272 - 3148683
Alignment:
| Q |
59 |
gcctgatcaatgcctgcataactaccaggatatcacattttagaacacttaaccatttttctatttctacaccaatatgttctgtttcttaataatgttt |
158 |
Q |
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| T |
3148272 |
gcctgatcaatgcctgcataactaccaggatatcacattttagaacacttaaccatttttctatttctacaccaatatgttctgtttcttaataatgttt |
3148371 |
T |
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| Q |
159 |
atatttgtaatattcatttgagtcaatcattttcaggagcacccaagtttgacaaaatctgaaaagaagaatatatgtggactgatgaatgtcaagaaat |
258 |
Q |
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| T |
3148372 |
atatttgtaatattcatttgagtcaatcattttcaggagcacccaagtttgactaaatctgaaaagaagaatatatgtggactgatgaatgtcaagaaat |
3148471 |
T |
|
| Q |
259 |
tgactgctgatgcatcggcacatgctgcacagaacgaacgtcttccacttcgagttgtagtgcaggtcctatattttgaacaagttagagctgcagccag |
358 |
Q |
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| T |
3148472 |
tgactgctgatgcatcggcacatgctgcacagaacgaacgtcttccacttcgagttgtagtgcaggtcctatattttgaacaagttagagctgcagccag |
3148571 |
T |
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| Q |
359 |
tgcccgagcatttgctaacagtccacgtgatccttcacatgccctgataaacggagacgaggaatgtgagaaaacactgggagtgagctgccattccctc |
458 |
Q |
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| T |
3148572 |
tgcccgagcatttgctaacagtccacgtgatccttcacatgccctgataaacggagacgaggaatgtgagaaaacactgggagtgagctgccattccctc |
3148671 |
T |
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| Q |
459 |
aacagacaaaca |
470 |
Q |
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| T |
3148672 |
aacagacaaaca |
3148683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 3148217 - 3148254
Alignment:
| Q |
5 |
tacacgtcttccaacaaaagtctcggtattgtattgag |
42 |
Q |
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| T |
3148217 |
tacacgtcttccaacaaaagtctcggtattgtattgag |
3148254 |
T |
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