View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_high_97 (Length: 277)

Name: NF3229_high_97
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_high_97
NF3229_high_97
[»] chr5 (4 HSPs)
chr5 (1-259)||(16194221-16194476)
chr5 (2-85)||(39946550-39946633)
chr5 (55-112)||(39945857-39945914)
chr5 (55-125)||(16195107-16195177)
[»] chr1 (1 HSPs)
chr1 (1-112)||(6942203-6942314)
[»] chr2 (2 HSPs)
chr2 (81-125)||(44986812-44986856)
chr2 (76-125)||(20606920-20606969)
[»] chr8 (1 HSPs)
chr8 (76-125)||(26847720-26847769)
[»] chr4 (4 HSPs)
chr4 (76-125)||(14527575-14527624)
chr4 (78-126)||(24666128-24666176)
chr4 (73-125)||(34450815-34450867)
chr4 (76-132)||(45393974-45394030)
[»] chr7 (1 HSPs)
chr7 (73-125)||(34808985-34809037)
[»] chr3 (1 HSPs)
chr3 (81-125)||(47571943-47571987)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 16194476 - 16194221
Alignment:
Q  1 ggacatggagcaaagatccagtgtggtaataagtaatgaaatcctatagacatatttaatctgacggtggaataaagtggttcaccgatgaggaacttaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| | ||||||    
T  16194476 ggacatggagcaaagatccagtgtggtaataagtaatgaaattctagagacatatttaatctgacggtggaataaagtggttcactgatgatggacttaa 16194377  T
Q  101 ttgatccttcactctagaattcaccaaataa--aaaagaccatatcacccnnnnnnnnnnnnnnnnngtagagagttatgttatgaaataagctactaac 198  Q
    ||||||| |||||||| ||| || |||||||  |||||||||||||||||                 ||||||| |||||||||||||||||||| ||||    
T  16194376 ttgatccctcactctataatccatcaaataaaaaaaagaccatatcaccc-----gaaaaaacaaaagtagagaattatgttatgaaataagctagtaac 16194282  T
Q  199 aacggattgacgggcattaacgtaataacgtgtttgtttatcagtttttctactgtgttta 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16194281 aacggattgacgggcattaacgtaataacgtgtttgtttatcagtttttctgctgtgttta 16194221  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 39946550 - 39946633
Alignment:
Q  2 gacatggagcaaagatccagtgtggtaataagtaatgaaatcctatagacatatttaatctgacggtggaataaagtggttcac 85  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||| |||||| ||| |||||||||||    
T  39946550 gacatggagcaaagatccagtgtggtaataagtaatgaaatcttgtagacgtatttaatctaacggtgaaattaagtggttcac 39946633  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 39945914 - 39945857
Alignment:
Q  55 tttaatctgacggtggaataaagtggttcaccgatgaggaacttaattgatccttcac 112  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| ||||    
T  39945914 tttaatctgacggtggaataaagtggtacaccgatgagggacttaattggtccctcac 39945857  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 16195107 - 16195177
Alignment:
Q  55 tttaatctgacggtggaataaagtggttcaccgatgaggaacttaattgatccttcactctagaattcacc 125  Q
    ||||||||||||||||||||| ||||| ||||  ||| | ||||||||||||| |||| ||||||| ||||    
T  16195107 tttaatctgacggtggaataatgtggtacaccagtgatggacttaattgatccctcaccctagaatccacc 16195177  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 6942314 - 6942203
Alignment:
Q  1 ggacatggagcaaagatccagtgtggtaataagtaatgaaatcctatagacatatttaatctgacggtggaataaagtggttcaccgatgaggaacttaa 100  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||||||||||||||| | ||||||    
T  6942314 ggacatggagcaaagattcagtgtggtaataagtattgaaatcttgtagacatatttaatctaacggtggaataaagtggttcaccgatgaaggacttaa 6942215  T
Q  101 ttgatccttcac 112  Q
    ||||||| ||||    
T  6942214 ttgatccctcac 6942203  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 44986856 - 44986812
Alignment:
Q  81 ttcaccgatgaggaacttaattgatccttcactctagaattcacc 125  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||||    
T  44986856 ttcaccgatgagggacttaattgatccctcaccctagaattcacc 44986812  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 20606920 - 20606969
Alignment:
Q  76 agtggttcaccgatgaggaacttaattgatccttcactctagaattcacc 125  Q
    |||||||||||| ||||| |||||||||| || |||| ||||||||||||    
T  20606920 agtggttcaccggtgagggacttaattgaaccctcaccctagaattcacc 20606969  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 26847720 - 26847769
Alignment:
Q  76 agtggttcaccgatgaggaacttaattgatccttcactctagaattcacc 125  Q
    |||||||||||| ||||||||||||||||||| |||  ||||||| ||||    
T  26847720 agtggttcaccggtgaggaacttaattgatccctcatcctagaatccacc 26847769  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 14527575 - 14527624
Alignment:
Q  76 agtggttcaccgatgaggaacttaattgatccttcactctagaattcacc 125  Q
    |||||||||||| ||||| ||||||||||||| |||| ||||||| ||||    
T  14527575 agtggttcaccggtgagggacttaattgatccctcaccctagaatccacc 14527624  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 24666176 - 24666128
Alignment:
Q  78 tggttcaccgatgaggaacttaattgatccttcactctagaattcacca 126  Q
    |||||||||| ||||| ||||||||||||| |||| ||||||| |||||    
T  24666176 tggttcaccggtgagggacttaattgatccctcaccctagaatccacca 24666128  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 34450867 - 34450815
Alignment:
Q  73 taaagtggttcaccgatgaggaacttaattgatccttcactctagaattcacc 125  Q
    ||||||| | ||||| ||||| ||||||||||||| |||| ||||||||||||    
T  34450867 taaagtgctccaccggtgagggacttaattgatccctcaccctagaattcacc 34450815  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 45394030 - 45393974
Alignment:
Q  76 agtggttcaccgatgaggaacttaattgatccttcactctagaattcaccaaataaa 132  Q
    |||||||||||| | ||  |||||||||| || |||||||||||||||||| |||||    
T  45394030 agtggttcaccggtaagagacttaattgaaccctcactctagaattcaccatataaa 45393974  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 34808985 - 34809037
Alignment:
Q  73 taaagtggttcaccgatgaggaacttaattgatccttcactctagaattcacc 125  Q
    ||||||||| ||||||||| | |||||||||| || |||||||||||| ||||    
T  34808985 taaagtggtacaccgatgaaggacttaattgaaccctcactctagaatccacc 34809037  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 47571943 - 47571987
Alignment:
Q  81 ttcaccgatgaggaacttaattgatccttcactctagaattcacc 125  Q
    ||||||| ||||| ||||||||||||| |||| ||||||||||||    
T  47571943 ttcaccggtgagggacttaattgatccctcaccctagaattcacc 47571987  T

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