View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_10 (Length: 487)
Name: NF3229_low_10
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 226 - 480
Target Start/End: Complemental strand, 20203108 - 20202854
Alignment:
| Q |
226 |
gcatcattctacattgaaggagatgccctcacgtggtgccattggatgcactctaatgcttagcttcattcttgacctactattctccatgctcttgaac |
325 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203108 |
gcatcattctacatggaaggagatgccctcacgtggtgccattggatgcactctaatggttagcttcattcttgacctactattctccatgctcttgaac |
20203009 |
T |
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| Q |
326 |
tgcctttttccccttcatactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaacttt |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203008 |
tgcctttttccccttcatactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaacttt |
20202909 |
T |
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| Q |
426 |
agcaaatcgcattattggccttcgcctacaatgttacttaagttgtttcatctct |
480 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20202908 |
agcaaatcgcattattggccttcgcctacaatgttacttaagttgtttcatctct |
20202854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 226 - 480
Target Start/End: Complemental strand, 22097131 - 22096877
Alignment:
| Q |
226 |
gcatcattctacattgaaggagatgccctcacgtggtgccattggatgcactctaatgcttagcttcattcttgacctactattctccatgctcttgaac |
325 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097131 |
gcatcattctacatggaaggagatgccctcacgtggtgccattggatgcactctaatggttagcttcattcttgacctactattctccatgctcttgaac |
22097032 |
T |
|
| Q |
326 |
tgcctttttccccttcatactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaacttt |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097031 |
tgcctttttccccttcatactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaacttt |
22096932 |
T |
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| Q |
426 |
agcaaatcgcattattggccttcgcctacaatgttacttaagttgtttcatctct |
480 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22096931 |
agcaaatcgcattattggccttcgcctacaatgttacttaagttgtttcatctct |
22096877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 20203405 - 20203199
Alignment:
| Q |
20 |
ccacctccttccatggctgacctaatttacaccatgaatgaaatcctgcaaaaccaacaagcttttcgcactgatttaataactgtttcaaccgtactca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203405 |
ccacctccttccatggctgacctaatttacaccatgaatgaaatcctgcaaaaccaacaagcttttcgcactgatttaataactgtttcaaccgtactca |
20203306 |
T |
|
| Q |
120 |
atcaactgcgaatccgtatcggaccaccaggcttcacaggttatccaccagatctaagaacagtgaaattttttccaaacacattcattaaacttgatat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203305 |
atcaactgcgaatccgtatcggaccaccaggcttcacaggttatccaccagatctaagaacagtgaaattttttccaaacacattcattaaacttgatat |
20203206 |
T |
|
| Q |
220 |
tcccatg |
226 |
Q |
| |
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||||||| |
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| T |
20203205 |
tcccatg |
20203199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 22097428 - 22097222
Alignment:
| Q |
20 |
ccacctccttccatggctgacctaatttacaccatgaatgaaatcctgcaaaaccaacaagcttttcgcactgatttaataactgtttcaaccgtactca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097428 |
ccacctccttccatggctgacctaatttacaccatgaatgaaatcctgcaaaaccaacaagcttttcgcactgatttaataactgtttcaaccgtactca |
22097329 |
T |
|
| Q |
120 |
atcaactgcgaatccgtatcggaccaccaggcttcacaggttatccaccagatctaagaacagtgaaattttttccaaacacattcattaaacttgatat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097328 |
atcaactgcgaatccgtatcggaccaccaggcttcacaggttatccaccagatctaagaacagtgaaattttttccaaacacattcattaaacttgatat |
22097229 |
T |
|
| Q |
220 |
tcccatg |
226 |
Q |
| |
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||||||| |
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| T |
22097228 |
tcccatg |
22097222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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