View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_102 (Length: 275)
Name: NF3229_low_102
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_102 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 6445017 - 6445209
Alignment:
| Q |
10 |
catcatcatcatgtatttgcgtttgtgttttaggaattccgtttggtggagaaccggtcttaagcaaaataattgcgttcagaacagaaaattactaatt |
109 |
Q |
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| T |
6445017 |
catcatcatcatgtatttgcgtttgtgttttaggaattccgtttggtggagaaccggtctcaagcaaaataattgcgttcagaacagaaaattactaatt |
6445116 |
T |
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| Q |
110 |
tatcctccactgcgattgtgaaatgcaaaaatgccatttttgttttgtctgaatcatatatctccacatacaaactacaaagattaatttttt |
202 |
Q |
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| T |
6445117 |
tatcctccactgcgattgtgaaatgcaaaaatgccatttttgttttgtctgaatcatgtatctccacatacaaactacaaagattaatttttt |
6445209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 6445236 - 6445301
Alignment:
| Q |
199 |
ttttcattgttgaatttaa----actgaaacatttggttaaacaggaagagatattttatcatttt |
260 |
Q |
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| T |
6445236 |
ttttcattgttgaatttaattaaactgaaacatctggttaaacaggaagagatattttatcatttt |
6445301 |
T |
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