View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_106 (Length: 265)

Name: NF3229_low_106
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_106
NF3229_low_106
[»] chr7 (6 HSPs)
chr7 (1-249)||(32016357-32016609)
chr7 (4-40)||(27720467-27720503)
chr7 (11-40)||(6518104-6518133)
chr7 (9-42)||(23747400-23747433)
chr7 (4-40)||(3250027-3250063)
chr7 (4-40)||(24672798-24672834)
[»] chr1 (1 HSPs)
chr1 (3-39)||(24808440-24808476)
[»] chr8 (1 HSPs)
chr8 (2-40)||(16900876-16900914)
[»] chr2 (2 HSPs)
chr2 (2-40)||(1813559-1813597)
chr2 (11-39)||(41947075-41947103)
[»] chr6 (4 HSPs)
chr6 (2-39)||(29165917-29165954)
chr6 (1-29)||(20808912-20808940)
chr6 (11-39)||(27708106-27708134)
chr6 (11-39)||(27727932-27727960)
[»] chr4 (2 HSPs)
chr4 (1-34)||(18986939-18986972)
chr4 (7-39)||(680126-680158)
[»] scaffold0349 (1 HSPs)
scaffold0349 (11-39)||(6511-6539)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 32016357 - 32016609
Alignment:
Q  1 acagatcacggaaaatagtggtttgttcaaattctgctacccgttgacaacactgacttcaagtcaagaggactcttgtatcggaattgggtccttactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  32016357 acagatcacggaaaatagtggtttgttcaaattctgctacccgttgacaacacttacttcaagtcaagaggactcttgtattggaattgggtccttactt 32016456  T
Q  101 ggcgcagaaaccttttctcttgggaggagg----agttactaaccttatggttaggattggggattggagggtgtctcatgaggaggacaggtggaagtt 196  Q
    |||| |||||||||||| ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32016457 ggcgtagaaaccttttcgcttgggaggaggagttagttactaaccttatggttaggattggggattggagggtgtctcatgaggaggacaggtggaagtt 32016556  T
Q  197 gagatttgaggatgatggagtcatttcggtaagctcagtgtacaaggtgttgg 249  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32016557 gagatttgaggatgatggagtcatttcggtaagctcaatgtacaaggtgttgg 32016609  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 27720503 - 27720467
Alignment:
Q  4 gatcacggaaaatagtggtttgttcaaattctgctac 40  Q
    ||||| |||||||||||||||||||||||||||||||    
T  27720503 gatcatggaaaatagtggtttgttcaaattctgctac 27720467  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 40
Target Start/End: Original strand, 6518104 - 6518133
Alignment:
Q  11 gaaaatagtggtttgttcaaattctgctac 40  Q
    ||||||||||||||||||||||||||||||    
T  6518104 gaaaatagtggtttgttcaaattctgctac 6518133  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 23747433 - 23747400
Alignment:
Q  9 cggaaaatagtggtttgttcaaattctgctaccc 42  Q
    ||||||||||||||||||| ||||||||||||||    
T  23747433 cggaaaatagtggtttgtttaaattctgctaccc 23747400  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 3250027 - 3250063
Alignment:
Q  4 gatcacggaaaatagtggtttgttcaaattctgctac 40  Q
    |||||| |||||||||||||| |||||||||||||||    
T  3250027 gatcacagaaaatagtggtttcttcaaattctgctac 3250063  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 24672798 - 24672834
Alignment:
Q  4 gatcacggaaaatagtggtttgttcaaattctgctac 40  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  24672798 gatcatggaaaatagcggtttgttcaaattctgctac 24672834  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 24808476 - 24808440
Alignment:
Q  3 agatcacggaaaatagtggtttgttcaaattctgcta 39  Q
    ||||||||||||| |||||||||||||||||||||||    
T  24808476 agatcacggaaaacagtggtttgttcaaattctgcta 24808440  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 16900876 - 16900914
Alignment:
Q  2 cagatcacggaaaatagtggtttgttcaaattctgctac 40  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  16900876 cagatcacggaaaatagcggtttgctcaaattctgctac 16900914  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 1813597 - 1813559
Alignment:
Q  2 cagatcacggaaaatagtggtttgttcaaattctgctac 40  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  1813597 cagatcacggaaaataatggtttgttcaaattccgctac 1813559  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 41947075 - 41947103
Alignment:
Q  11 gaaaatagtggtttgttcaaattctgcta 39  Q
    |||||||||||||||||||||||||||||    
T  41947075 gaaaatagtggtttgttcaaattctgcta 41947103  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 29165954 - 29165917
Alignment:
Q  2 cagatcacggaaaatagtggtttgttcaaattctgcta 39  Q
    |||||||||||||| || ||||||||||||||||||||    
T  29165954 cagatcacggaaaacagcggtttgttcaaattctgcta 29165917  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 20808940 - 20808912
Alignment:
Q  1 acagatcacggaaaatagtggtttgttca 29  Q
    |||||||||||||||||||||||||||||    
T  20808940 acagatcacggaaaatagtggtttgttca 20808912  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 27708106 - 27708134
Alignment:
Q  11 gaaaatagtggtttgttcaaattctgcta 39  Q
    |||||||||||||||||||||||||||||    
T  27708106 gaaaatagtggtttgttcaaattctgcta 27708134  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 27727932 - 27727960
Alignment:
Q  11 gaaaatagtggtttgttcaaattctgcta 39  Q
    |||||||||||||||||||||||||||||    
T  27727932 gaaaatagtggtttgttcaaattctgcta 27727960  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 18986939 - 18986972
Alignment:
Q  1 acagatcacggaaaatagtggtttgttcaaattc 34  Q
    |||||||||||||| |||||||||||||||||||    
T  18986939 acagatcacggaaagtagtggtttgttcaaattc 18986972  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 680126 - 680158
Alignment:
Q  7 cacggaaaatagtggtttgttcaaattctgcta 39  Q
    ||||||||||||| |||||||||||||||||||    
T  680126 cacggaaaatagttgtttgttcaaattctgcta 680158  T

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Target: scaffold0349 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 6511 - 6539
Alignment:
Q  11 gaaaatagtggtttgttcaaattctgcta 39  Q
    |||||||||||||||||||||||||||||    
T  6511 gaaaatagtggtttgttcaaattctgcta 6539  T

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