View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3229_low_109 (Length: 259)
Name: NF3229_low_109
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_109 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 49165262 - 49165487
Alignment:
| Q |
17 |
agaagttaaaagtaaaactattatgtcatataaaggtaaatctcaacatcattgtcgtgactccctttgggaagttgaagttgaatcaagcagtattgtc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49165262 |
agaagttaaaagtaaaactattatgtcatataaaggtaaatctcaacatcattgtcgtgactccctttgggaaattgaagttgaatcaagcagtattgtc |
49165361 |
T |
|
| Q |
117 |
aagactgaatttgaacaaatcacgatcgttctaccatacactatttaatacaaaatgttgtttagtggcactacaatgcagcttgaataatcctctannn |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49165362 |
aagactgaatttgaacaaatcacgattgttctaccatacactatttaatacaaaatgttgtttagtggcactacaatgcagcttgaataatcctctattt |
49165461 |
T |
|
| Q |
217 |
nnnnatgactcacgattgacaacact |
242 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
49165462 |
ttttatgactcacgattgacaacact |
49165487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 40935179 - 40935228
Alignment:
| Q |
123 |
gaatttgaacaaatcacgatcgttctaccatacactatttaatacaaaat |
172 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||| ||||||||||||||| |
|
|
| T |
40935179 |
gaatttgaacaaattgctatcgttctactatacattatttaatacaaaat |
40935228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 35304014 - 35303966
Alignment:
| Q |
123 |
gaatttgaacaaatcacgatcgttctaccatacactatttaatacaaaa |
171 |
Q |
| |
|
||||||||| ||||||| || ||||| |||||||||||||| ||||||| |
|
|
| T |
35304014 |
gaatttgaaaaaatcactattgttctcccatacactatttagtacaaaa |
35303966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University