View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_110 (Length: 259)
Name: NF3229_low_110
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_110 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 40333463 - 40333219
Alignment:
| Q |
15 |
gagaggcaatgcgatgaacttgttggcgttgaagtggtgtggtagcatgtctttcgaacgtcatttttggagatgtatggaaaatgctaaaatatacgac |
114 |
Q |
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| T |
40333463 |
gagaggcgatgcgatgaacttgttggcgttgaagtggtgtggtagcatgtctttcgaacgtcatttttggagatgtatacaaaatgctaaaatacacgac |
40333364 |
T |
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| Q |
115 |
aaaatttgtcgtcagatttacacgacaagtttataattaccacttcctannnnnnnnctaattttgatttgatacaaatgacaaattttgcctacacggt |
214 |
Q |
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| T |
40333363 |
aaaatttgtcgtcatatttacacaacaagtttgtaattaccacttcctatttttttcctaattttgatttgacacaaatgacaaattttgcctcctctgt |
40333264 |
T |
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| Q |
215 |
atatttcttatgagaaaacacttcattgaaggtccaaatcaactt |
259 |
Q |
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| T |
40333263 |
atatttcttatgagaaaacacttcattcaaggtccaaatcaactt |
40333219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 13066482 - 13066648
Alignment:
| Q |
93 |
ggaaaatgctaaaatatacgacaaaatttgtcgtcagatttacacgacaagtttataattaccacttcctannnnnnnnctaattttgatttgatacaaa |
192 |
Q |
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| T |
13066482 |
ggaaaatgctaaaatacacgacaaaatttgtcgacagatttacacgacaagtttgtaattaccacttcctatttttttcctaattttgatttgacacaaa |
13066581 |
T |
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| Q |
193 |
tgacaaattttgcctacacggtatatttcttatgagaaaacacttcattgaaggtccaaatcaactt |
259 |
Q |
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| T |
13066582 |
tgacaaatttttcctccactgtatatttcttatgagaaaacacttcattcaaggtccaaatcaactt |
13066648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 90 - 256
Target Start/End: Original strand, 17074353 - 17074519
Alignment:
| Q |
90 |
tatggaaaatgctaaaatatacgacaaaatttgtcgtcagatttacacgacaagtttataattaccacttcctannnnnnnnctaattttgatttgatac |
189 |
Q |
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| T |
17074353 |
tatggaaaatgttaaaatacacgacaaaaattgtcgtcaaatttacacgacaagtttgttattaccacttactatttttttcctaattttgatttgacac |
17074452 |
T |
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| Q |
190 |
aaatgacaaattttgcctacacggtatatttcttatgagaaaacacttcattgaaggtccaaatcaa |
256 |
Q |
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| T |
17074453 |
aaatgacaaattatgcctccactgtatatttcttatgagaaaacacttcattcaaggtccaaatcaa |
17074519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 90 - 256
Target Start/End: Complemental strand, 17573917 - 17573751
Alignment:
| Q |
90 |
tatggaaaatgctaaaatatacgacaaaatttgtcgtcagatttacacgacaagtttataattaccacttcctannnnnnnnctaattttgatttgatac |
189 |
Q |
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||||||||||| ||||||| ||||||||| ||||||||| ||||||||||||||||| | |||||||||| ||| ||||||||||||||| || |
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| T |
17573917 |
tatggaaaatgttaaaatacacgacaaaaattgtcgtcaaatttacacgacaagtttgttattaccacttactatttttttcctaattttgatttgacac |
17573818 |
T |
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| Q |
190 |
aaatgacaaattttgcctacacggtatatttcttatgagaaaacacttcattgaaggtccaaatcaa |
256 |
Q |
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| T |
17573817 |
aaatgacaaattatgcctccactgtatatttcttatgagaaaacacttcattcaaggtccaaatcaa |
17573751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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