View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_114 (Length: 255)

Name: NF3229_low_114
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_114
NF3229_low_114
[»] chr4 (9 HSPs)
chr4 (13-238)||(6948110-6948335)
chr4 (40-160)||(11160646-11160766)
chr4 (37-151)||(11931944-11932058)
chr4 (93-160)||(11166276-11166343)
chr4 (94-158)||(11179291-11179355)
chr4 (112-158)||(11174669-11174715)
chr4 (112-158)||(11182131-11182177)
chr4 (94-195)||(11189953-11190054)
chr4 (99-157)||(52791991-52792049)
[»] chr7 (2 HSPs)
chr7 (16-238)||(662123-662345)
chr7 (39-149)||(6778514-6778624)
[»] chr8 (3 HSPs)
chr8 (91-151)||(24817214-24817274)
chr8 (108-157)||(24406504-24406553)
chr8 (108-157)||(24412655-24412704)
[»] chr5 (3 HSPs)
chr5 (106-151)||(8981943-8981988)
chr5 (106-157)||(8991442-8991493)
chr5 (70-151)||(35390508-35390589)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 6948110 - 6948335
Alignment:
Q  13 cagatgagattgaagatcgtaacattatcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcggaactggcagcct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6948110 cagatgagattgaagatcgtaacattatcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcagaactggcagcct 6948209  T
Q  113 caacatgcttcttgcaatactcaataaccttagccaagaacttgccgggtatgtgcggaaccaggatttcagtgtcgttggcagcatcatccgtcaaatt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6948210 caacatgcttcttgcaatactcaataaccttagccaagaacttgccgggtatgtgcggaaccaggatttcagtgtcgttggcagcaccatccgtcaaatt 6948309  T
Q  213 cttgattgattggaacacaacctctt 238  Q
    ||||||||||||||||||||||||||    
T  6948310 cttgattgattggaacacaacctctt 6948335  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 11160766 - 11160646
Alignment:
Q  40 tcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcggaactggcagcctcaacatgcttcttgcaatactcaataa 139  Q
    |||||||| ||||||||||||||||||||||||| |||||| ||| || |||||||||| ||||||| ||| ||||||||||||||||||| ||||||||    
T  11160766 tcaaccttgacgaattcagtgtcccatttgttaatttcatcttcagagggcttttcatcagaactggtagcgtcaacatgcttcttgcaatgctcaataa 11160667  T
Q  140 ccttagccaagaacttgccgg 160  Q
    || ||||||||| ||||||||    
T  11160666 ccatagccaagatcttgccgg 11160646  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 11931944 - 11932058
Alignment:
Q  37 ttatcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcggaactggcagcctcaacatgcttcttgcaatactcaa 136  Q
    ||||||||||| ||||||||||  |||||||| || | |||||| ||  || ||||| ||||||||||  ||||||||||||||||||||||||||||||    
T  11931944 ttatcaaccttgacgaattcagcatcccatttcttcaattcatcctcggagggctttccatcggaactctcagcctcaacatgcttcttgcaatactcaa 11932043  T
Q  137 taaccttagccaaga 151  Q
    ||||||| |||||||    
T  11932044 taaccttcgccaaga 11932058  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 11166276 - 11166343
Alignment:
Q  93 ttcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgccgg 160  Q
    |||||| ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||    
T  11166276 ttcatcagaacttgcagcatcaacatgtttcttgcaatactcaataaccatagccaagatcttgccgg 11166343  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 11179291 - 11179355
Alignment:
Q  94 tcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgcc 158  Q
    ||||| ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  11179291 tcatcagaacttgcagcatcaacatgtttcttgcaatactcaataaccatagccaagatcttgcc 11179355  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 11174715 - 11174669
Alignment:
Q  112 tcaacatgcttcttgcaatactcaataaccttagccaagaacttgcc 158  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||    
T  11174715 tcaacatgtttcttgcaatactcgataaccttagccaagatcttgcc 11174669  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 11182177 - 11182131
Alignment:
Q  112 tcaacatgcttcttgcaatactcaataaccttagccaagaacttgcc 158  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||    
T  11182177 tcaacatgtttcttgcaatactcgataaccttagccaagatcttgcc 11182131  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 11189953 - 11190054
Alignment:
Q  94 tcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgccgggtatgtgcggaaccaggatttcagtgtcgttgg 193  Q
    ||||| |||||  |||| |||||||| ||||||||||||||||||||| | ||||||| |||||| | || || || ||   ||||||||||||| ||||    
T  11189953 tcatcagaacttacagcatcaacatgtttcttgcaatactcaataaccatggccaagatcttgcctgttacgttcgaaatagggatttcagtgtcattgg 11190052  T
Q  194 ca 195  Q
    ||    
T  11190053 ca 11190054  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 52791991 - 52792049
Alignment:
Q  99 ggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgc 157  Q
    |||||||| ||| ||||| |||||||| ||||||||||||||||| | ||||| |||||    
T  52791991 ggaactggtagcttcaacgtgcttcttacaatactcaataaccttcgtcaagatcttgc 52792049  T

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Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 662123 - 662345
Alignment:
Q  16 atgagattgaagatcgtaacattatcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcggaactggcagcctcaa 115  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  662123 atgagattgaagagcgtaacattatcaacctcgacgaattcagtgtaccatttgttaagtttatcatcaaagagcttttcataagaactggcagcctcaa 662222  T
Q  116 catgcttcttgcaatactcaataaccttagccaagaacttgccgggtatgtgcggaaccaggatttcagtgtcgttggcagcatcatccgtcaaattctt 215  Q
    |||| ||||||||||||||||||||||||||||| | |||||| | |||| ||||||||||||||||| |||||| |||| ||||||| |||||||||||    
T  662223 catgtttcttgcaatactcaataaccttagccaatatcttgcccgttatgcgcggaaccaggatttcaatgtcgtcggcaacatcatcggtcaaattctt 662322  T
Q  216 gattgattggaacacaacctctt 238  Q
    ||||||||||||||| |||||||    
T  662323 gattgattggaacaccacctctt 662345  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 6778624 - 6778514
Alignment:
Q  39 atcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcggaactggcagcctcaacatgcttcttgcaatactcaata 138  Q
    ||||||||| ||||||||||  ||||| || ||||| ||||| ||  |  | |||||||||||||| || || |||||||||||||| || || |||||     
T  6778624 atcaaccttcacgaattcagcatcccaattcttaagatcatcttctgaaggtttttcatcggaactcgcggcatcaacatgcttcttacagtattcaatc 6778525  T
Q  139 accttagccaa 149  Q
    ||||| |||||    
T  6778524 accttcgccaa 6778514  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 24817274 - 24817214
Alignment:
Q  91 ttttcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaaga 151  Q
    ||||| |||||||| | ||||||||||||||||||||||||||||||||| || |||||||    
T  24817274 ttttcttcggaacttgtagcctcaacatgcttcttgcaatactcaataactttcgccaaga 24817214  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 24406504 - 24406553
Alignment:
Q  108 agcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgc 157  Q
    |||||||||||||||||| |||||||| |||||||| ||||||| |||||    
T  24406504 agcctcaacatgcttcttacaatactcgataacctttgccaagatcttgc 24406553  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 24412704 - 24412655
Alignment:
Q  108 agcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgc 157  Q
    |||||||||||||||||| |||||||| |||||||| | ||||| |||||    
T  24412704 agcctcaacatgcttcttacaatactcgataacctttgtcaagatcttgc 24412655  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 8981988 - 8981943
Alignment:
Q  106 gcagcctcaacatgcttcttgcaatactcaataaccttagccaaga 151  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||    
T  8981988 gcagcctcaacatgcttcttgcaatactcaatcaccttcgccaaga 8981943  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 8991493 - 8991442
Alignment:
Q  106 gcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgc 157  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||||| |||||    
T  8991493 gcagcgtcaacatgcttcttgcaatactcaatcaccttcgccaagatcttgc 8991442  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 35390508 - 35390589
Alignment:
Q  70 ttaagttcatcatcaaagagcttttcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaaga 151  Q
    ||||| |||||||  ||| | ||||| ||||||||  | |||||||||||||| || ||||||||||||||||| |||||||    
T  35390508 ttaagatcatcatgtaagggtttttcttcggaactcccggcctcaacatgctttttacaatactcaataaccttcgccaaga 35390589  T

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