View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_117 (Length: 252)

Name: NF3229_low_117
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_117
NF3229_low_117
[»] chr6 (10 HSPs)
chr6 (10-252)||(30958580-30958822)
chr6 (14-252)||(31012389-31012630)
chr6 (49-248)||(15523195-15523394)
chr6 (140-248)||(31001966-31002071)
chr6 (140-252)||(31221752-31221864)
chr6 (159-252)||(30664000-30664093)
chr6 (204-252)||(15493361-15493409)
chr6 (14-84)||(15493062-15493132)
chr6 (12-84)||(31001838-31001910)
chr6 (125-157)||(30943437-30943469)


Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 30958580 - 30958822
Alignment:
Q  10 gcagagacatcaaaaacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtcattcgccatgtggtgctggtaaatc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||| |    
T  30958580 gcagagacatcaaaaacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtctttctccttgtggagctggtaaacc 30958679  T
Q  110 atttcatctttactgccataacaaccaaaatactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaa 209  Q
    |||| | ||| ||||  |  | ||  | |  ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| |||    
T  30958680 attttaccttaactgtaaggaaaataacatcactaccattctgttatcctcacaaaatttaacagtacttgacatcaacatagaaacacacaccatgaaa 30958779  T
Q  210 ctcaaaagaacagaccttcatcaaaatctctgttctcctcaat 252  Q
    || ||||||||||||||| |||||||||| |||||||||||||    
T  30958780 ctaaaaagaacagaccttgatcaaaatctttgttctcctcaat 30958822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 31012389 - 31012630
Alignment:
Q  14 agacatcaaaaacttctacaactgcggaagaatca---ccaacatctcttatccgttctggggacaaaatcgtcattcgccatgtggtgctggtaaatca 110  Q
    ||||||||||||||  |||| ||||||||| || |   |||||||||||||||| ||||||||| ||||||||| ||  |  ||||||||||| ||  |     
T  31012389 agacatcaaaaactcttacagctgcggaagtattatctccaacatctcttatccattctggggagaaaatcgtccttttcattgtggtgctggcaacccg 31012488  T
Q  111 tttcatctttactgccataacaaccaaaatactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaac 210  Q
    | ||| ||||||||||| || ||| || ||||||||||| ||||||  |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  31012489 tatcacctttactgccacaataacaaagatactaccattttgttatactcacaaaaattcacagtacttgacatcaacatagaaaaacacaccatgaaac 31012588  T
Q  211 tcaaaagaacagaccttcatcaaaatctctgttctcctcaat 252  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  31012589 tcaaaagaacagaccttgatcaaaatctttgttctcctcaat 31012630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 248
Target Start/End: Complemental strand, 15523394 - 15523195
Alignment:
Q  49 ccaacatctcttatccgttctggggacaaaatcgtcattcgccatgtggtgctggtaaatcatttcatctttactgccataacaaccaaaatactaccat 148  Q
    |||||||||||||||| || |||||||||||||||| ||  | |||||| ||||| ||  | ||| | ||| ||||||| |||||| | |  || |||||    
T  15523394 ccaacatctcttatccattttggggacaaaatcgtccttttcaatgtggggctggcaaccctttttaccttaactgccacaacaacaacaccaccaccat 15523295  T
Q  149 tctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctctgttctcct 248  Q
    ||| ||||| ||||||||||||||||||||||| || ||||   || | |||| ||||||||||||||||||||||||| |||||||||| |||||||||    
T  15523294 tctcttatcctcacaaaatttcacagtacttgatataaacagcaaagaccacatcatcaaactcaaaagaacagaccttgatcaaaatctatgttctcct 15523195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 248
Target Start/End: Original strand, 31001966 - 31002071
Alignment:
Q  140 tactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctc 239  Q
    ||||||||||||| |||| |||||||||||||| |||||||| ||||||| | |||| |||||||| ||||| ||||||||||||||   |||||||||     
T  31001966 tactaccattctgatatcctcacaaaatttcactgtacttgaaatcaacacaaaaaatcacaccatgaaacttaaaagaacagacct---tcaaaatctt 31002062  T
Q  240 tgttctcct 248  Q
    |||||||||    
T  31002063 tgttctcct 31002071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 252
Target Start/End: Original strand, 31221752 - 31221864
Alignment:
Q  140 tactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctc 239  Q
    |||||||||||| ||||| ||||||||||||||||||||||| || |||  | |||  |||||||||||||| || ||||||||||||   |||||| |     
T  31221752 tactaccattctattatcatcacaaaatttcacagtacttgatattaactcacaaattcacaccatcaaacttaagagaacagacctttcccaaaatttt 31221851  T
Q  240 tgttctcctcaat 252  Q
    |||||||||||||    
T  31221852 tgttctcctcaat 31221864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 30664093 - 30664000
Alignment:
Q  159 tcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctctgttctcctcaat 252  Q
    |||||||||||||  |||||| | || |||| |  ||| |||| ||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  30664093 tcacaaaatttcaacgtacttcaaataaacacaacaaatcacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaat 30664000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 15493361 - 15493409
Alignment:
Q  204 atcaaactcaaaagaacagaccttcatcaaaatctctgttctcctcaat 252  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||    
T  15493361 atcaaactcaaaagaacagaccttgatcaaaatctatgttctcctcaat 15493409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 15493062 - 15493132
Alignment:
Q  14 agacatcaaaaacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtc 84  Q
    ||||||||| |||| ||||||||| ||||  ||| |||||||||||||||| ||||||||||||| |||||    
T  15493062 agacatcaagaactcctacaactgtggaaatatctccaacatctcttatccattctggggacaaagtcgtc 15493132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 31001838 - 31001910
Alignment:
Q  12 agagacatcaaaaacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtc 84  Q
    |||||||| ||||| | ||| ||||| ||||   ||||||||||||||||||| ||||||||| |||||||||    
T  31001838 agagacataaaaaattcctataactgtggaaatctcaccaacatctcttatccattctggggaaaaaatcgtc 31001910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 30943437 - 30943469
Alignment:
Q  125 ccataacaaccaaaatactaccattctgttatc 157  Q
    ||||||||||||||| |||||||||||||||||    
T  30943437 ccataacaaccaaaacactaccattctgttatc 30943469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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