View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3229_low_119 (Length: 252)
Name: NF3229_low_119
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_119 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 52435212 - 52434990
Alignment:
| Q |
11 |
cacagattttggttgggaaatttcgtggaaacatcaacatcatgctcttaaaggcgaacatttgtactcattgcagagtaattttaaccacatgtaagta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52435212 |
cacagattttggttgggaaatttcgtggaaacatctacatcatgctcataaaggcgaacatttatactcattgcagagtaattttaaccacatgtaagta |
52435113 |
T |
|
| Q |
111 |
gttgtgaggtccatgaaaatgaaatatttgaccaaccaaccatggagagatcattcattattcataaccataatatttgcgtcagaaatttatcatttag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52435112 |
gttgtgaggtccatgaaaatgaaatatttgaccaaccaaccatggagagatcattcattattcataaccataatatttgcgtcagaaatttatcatttag |
52435013 |
T |
|
| Q |
211 |
tgaggaattttccttcaatatac |
233 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
52435012 |
tgaggaattttccttcaatatac |
52434990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University