View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3229_low_120 (Length: 251)
Name: NF3229_low_120
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_120 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 6947792 - 6948024
Alignment:
| Q |
8 |
aagcataggtaaatctacaatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataataatcaacaaaagcagtggcct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||||| || |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6947792 |
aagcataggtaaatctacaatgcagttcttt-catgatgaaaacgaagcgtaacataatatcccatgttaaaatataataatcaacaaa-gcagtggcct |
6947889 |
T |
|
| Q |
108 |
cttaactatcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcc |
207 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6947890 |
ctt---------aaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacaacgaacttcctcatcttcc |
6947980 |
T |
|
| Q |
208 |
tcgggacggtaagcattcacaatgttgaaaatcttactaatctc |
251 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6947981 |
ttgggacggtaagcattcacaatgttgaaaatcttactaatctc |
6948024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 6950263 - 6950367
Alignment:
| Q |
8 |
aagcataggtaaatcta-caatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataataatcaacaaaagcagtggcc |
106 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| |||||||||||||||| |||||| || |||||||||||||||||||||| |||| |||||||||| | |
|
|
| T |
6950263 |
aagcatagataaatctaacaatgcagttcttt-catgatgaaaacgaagcgtaacataatatcccatgttaaaatataataaacaac-aaagcagtggtc |
6950360 |
T |
|
| Q |
107 |
tcttaac |
113 |
Q |
| |
|
||||||| |
|
|
| T |
6950361 |
tcttaac |
6950367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 11160986 - 11160879
Alignment:
| Q |
144 |
aaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatctta |
243 |
Q |
| |
|
|||||||||||||||||| | ||||||| |||||| |||| | ||| |||||||| |||||||| ||| |||| |||| | |||||||||| ||||| |
|
|
| T |
11160986 |
aaccctagactctaatcattcgtcaaaagcccattgagtttcgctacggacttcctcctcttcctccggagtgtaatcattaataatgttgaaagtctta |
11160887 |
T |
|
| Q |
244 |
ctaatctc |
251 |
Q |
| |
|
| |||||| |
|
|
| T |
11160886 |
cgaatctc |
11160879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 166
Target Start/End: Original strand, 6950380 - 6950411
Alignment:
| Q |
135 |
tagagactaaaccctagactctaatcagtttt |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
6950380 |
tagagactaaaccctagactctaatcagtttt |
6950411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 116 - 244
Target Start/End: Original strand, 661917 - 662045
Alignment:
| Q |
116 |
tcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacg |
215 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || |||| ||| ||||| |
|
|
| T |
661917 |
tcttaaccatataaaattttagagactaaaccctagactctaattagttttcaaaagtgcattgattttcacgacaaacttcatcctcttactccggacg |
662016 |
T |
|
| Q |
216 |
gtaagcattcacaatgttgaaaatcttac |
244 |
Q |
| |
|
||||||||| | ||||||||||||||||| |
|
|
| T |
662017 |
gtaagcatttataatgttgaaaatcttac |
662045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University