View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_122 (Length: 251)
Name: NF3229_low_122
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_122 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 15771984 - 15772210
Alignment:
| Q |
1 |
cacactcaaaatggcccaacaacaaccttcaaaattgttctccattccaaatttctccatcttttgatcttataacacatttattgttaagccatgatta |
100 |
Q |
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| T |
15771984 |
cacactcaaaatggcccaacaacaaccttcaaaattgttctccattccaaatttctccatctcttgatcttataacacatttattgttaagccatgatta |
15772083 |
T |
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| Q |
101 |
gataactaactcaaatcatgtagattagataacataatcaagatacatacttcaaacatgagttattaatgtaactatgaataaaagtaatatacggtgt |
200 |
Q |
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| T |
15772084 |
gataactaactcaaatcatgtagattagataacataatcaagatgcatacttcaaacatgagttatt-atgtaactaggaataaaagtaatatacggtat |
15772182 |
T |
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| Q |
201 |
tactcaccacccatcatatatacttata |
228 |
Q |
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| T |
15772183 |
tactcaccacccatcatatatacttata |
15772210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 46616822 - 46616767
Alignment:
| Q |
107 |
taactcaaatcatgtagattagataacataatcaagatacatacttcaaacatgag |
162 |
Q |
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| T |
46616822 |
taactcaaatcttgtagattagatagcataatcaaaaagcatacttaaaacatgag |
46616767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 18376345 - 18376396
Alignment:
| Q |
118 |
atgtagattagataacataatcaagatacatacttcaaacatgagttattaat |
170 |
Q |
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| T |
18376345 |
atgtagattagataacatcatctagag-catacttcaagcatgagttattaat |
18376396 |
T |
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