View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_125 (Length: 250)

Name: NF3229_low_125
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_125
NF3229_low_125
[»] chr8 (5 HSPs)
chr8 (3-128)||(39047208-39047340)
chr8 (193-240)||(39047096-39047143)
chr8 (57-114)||(9512438-9512495)
chr8 (1-52)||(5076263-5076314)
chr8 (3-56)||(5015426-5015479)
[»] chr5 (5 HSPs)
chr5 (3-56)||(29195258-29195311)
chr5 (3-53)||(12143869-12143919)
chr5 (3-47)||(20882960-20883004)
chr5 (4-56)||(40018105-40018157)
chr5 (3-56)||(35048749-35048801)
[»] chr1 (3 HSPs)
chr1 (3-56)||(16313961-16314014)
chr1 (3-53)||(1181497-1181547)
chr1 (3-56)||(7014985-7015038)
[»] chr4 (11 HSPs)
chr4 (3-53)||(22923321-22923371)
chr4 (3-53)||(22927974-22928024)
chr4 (3-53)||(22984253-22984303)
chr4 (3-53)||(22997841-22997891)
chr4 (3-56)||(45864951-45865004)
chr4 (3-56)||(54185607-54185660)
chr4 (3-55)||(12657194-12657246)
chr4 (57-115)||(43138908-43138966)
chr4 (61-112)||(16935543-16935594)
chr4 (9-56)||(21283799-21283846)
chr4 (3-53)||(32304900-32304950)
[»] scaffold0001 (1 HSPs)
scaffold0001 (4-56)||(185436-185488)
[»] chr7 (3 HSPs)
chr7 (57-117)||(47441624-47441684)
chr7 (3-54)||(432933-432984)
chr7 (3-56)||(44226520-44226573)
[»] chr6 (3 HSPs)
chr6 (3-47)||(1031791-1031835)
chr6 (9-57)||(4410234-4410282)
chr6 (8-56)||(35018739-35018787)
[»] chr3 (4 HSPs)
chr3 (4-56)||(30842114-30842166)
chr3 (3-57)||(20513508-20513562)
chr3 (3-54)||(46182997-46183048)
chr3 (6-53)||(46637060-46637107)
[»] chr2 (3 HSPs)
chr2 (3-56)||(5848090-5848143)
chr2 (3-56)||(19380219-19380272)
chr2 (4-47)||(187267-187310)
[»] scaffold0010 (1 HSPs)
scaffold0010 (4-54)||(28599-28649)
[»] scaffold0015 (1 HSPs)
scaffold0015 (9-53)||(33592-33636)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 39047340 - 39047208
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg-------taagtaacgcaagtgttaaactctgtattacttaacgaa 95  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||       ||| |||||||||||||||||||||| ||||||||||||    
T  39047340 ttgcgctagttaactaacgcaagtgaaaaactatgcgttagttaactaacgctgcgcaggttaaataacgcaagtgttaaactctgtgttacttaacgaa 39047241  T
Q  96 cgccgcgtgggttaactcacgctcgaataaaac 128  Q
     |||| ||||||||||||||||| |||||||||    
T  39047240 tgccgtgtgggttaactcacgctggaataaaac 39047208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 39047143 - 39047096
Alignment:
Q  193 aaaaagagtatgaactgttattctaaattcatgctctaggaacctttg 240  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39047143 aaaaagagtatgaactgttattctaaattcatgctttaggaacctttg 39047096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 9512495 - 9512438
Alignment:
Q  57 taagtaacgcaagtgttaaactctgtattacttaacgaacgccgcgtgggttaactca 114  Q
    |||||||||||||||||||||||||| ||| ||||| ||||| ||||| |||||||||    
T  9512495 taagtaacgcaagtgttaaactctgtgttatttaactaacgctgcgtgagttaactca 9512438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5076314 - 5076263
Alignment:
Q  1 cattgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaac 52  Q
    ||||||| |||||||||||||||| || ||||||||||| ||||||| ||||    
T  5076314 cattgcgttagttaactaacgcaaatgtaaaactatgcgctagttaactaac 5076263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 5015426 - 5015479
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 56  Q
    ||||| |||||||||||||||  || ||||||||||| ||||||| ||||||||    
T  5015426 ttgcgttagttaactaacgcacgtgtaaaactatgcgctagttaactaacgctg 5015479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 29195258 - 29195311
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 56  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  29195258 ttgcgctagttaactaacgcaagtgaaaaactatgcgttagttaactaacgctg 29195311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 12143869 - 12143919
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacg 53  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| |||||    
T  12143869 ttgcgctagttaactaacgcaagtgaaaaactatgtgttagttaactaacg 12143919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 20882960 - 20883004
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaa 47  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  20882960 ttgcgctagttaactaacgcaagtgaaaaactatgtgttagttaa 20883004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 40018105 - 40018157
Alignment:
Q  4 tgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 56  Q
    |||| |||||||||||||||| || ||||||||||||||||||| ||| ||||    
T  40018105 tgcgttagttaactaacgcaagtgtaaaactatgcgttagttaactaatgctg 40018157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 35048749 - 35048801
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 56  Q
    ||||| ||||||| |||||||| |||||||| ||||||||||||| ||||||||    
T  35048749 ttgcgttagttaattaacgcaagtgaaaaac-atgcgttagttaactaacgctg 35048801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 16313961 - 16314014
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 56  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  16313961 ttgcgctagttaactaacgcaagtgaaaaactatgcgttagttaactaacgctg 16314014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 1181547 - 1181497
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacg 53  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  1181547 ttgcgctagttaactaacgcaagtgaaaaactatgcgttagttaactaacg 1181497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 7015038 - 7014985
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 56  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  7015038 ttgcgctagttaactaacgcaagtgaaaaactacgcgttagttaactaacgctg 7014985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 22923371 - 22923321
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacg 53  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| |||||    
T  22923371 ttgcgctagttaactaacgcaagtgaaaaactatgtgttagttaactaacg 22923321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 22928024 - 22927974
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacg 53  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| |||||    
T  22928024 ttgcgctagttaactaacgcaagtgaaaaactatgtgttagttaactaacg 22927974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 22984303 - 22984253
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacg 53  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| |||||    
T  22984303 ttgcgctagttaactaacgcaagtgaaaaactatgtgttagttaactaacg 22984253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 22997891 - 22997841
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacg 53  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| |||||    
T  22997891 ttgcgctagttaactaacgcaagtgaaaaactatgtgttagttaactaacg 22997841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 45865004 - 45864951
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 56  Q
    ||||||||||||||||| |||| || ||||||||||||||||||| ||||||||    
T  45865004 ttgcgctagttaactaatgcaagtgtaaaactatgcgttagttaagtaacgctg 45864951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 54185660 - 54185607
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 56  Q
    |||||||||||||||||||||| || ||||||||||| ||||||| ||||||||    
T  54185660 ttgcgctagttaactaacgcaagtgtaaaactatgcgctagttaagtaacgctg 54185607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 12657246 - 12657194
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgct 55  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||| |||||||    
T  12657246 ttgcgctagttaactaacacaagtgaaaaactatgtgttagttaactaacgct 12657194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 43138908 - 43138966
Alignment:
Q  57 taagtaacgcaagtgttaaactctgtattacttaacgaacgccgcgtgggttaactcac 115  Q
    ||||| ||||||||||||||||| || ||||||||| ||||| ||||| ||||||||||    
T  43138908 taagtgacgcaagtgttaaactccgtgttacttaactaacgctgcgtgtgttaactcac 43138966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 16935543 - 16935594
Alignment:
Q  61 taacgcaagtgttaaactctgtattacttaacgaacgccgcgtgggttaact 112  Q
    ||||||||||||||||||||||  |||||||| ||||| ||||| |||||||    
T  16935543 taacgcaagtgttaaactctgtgctacttaactaacgctgcgtgagttaact 16935594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 21283799 - 21283846
Alignment:
Q  9 tagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 56  Q
    |||||||||||||||| || ||||||||| ||||||||| ||||||||    
T  21283799 tagttaactaacgcaagtgtaaaactatgtgttagttaactaacgctg 21283846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 32304900 - 32304950
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacg 53  Q
    ||||||||||||||| |||||| || ||||||||| ||||||||| |||||    
T  32304900 ttgcgctagttaactcacgcaagtgtaaaactatgtgttagttaactaacg 32304950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 185436 - 185488
Alignment:
Q  4 tgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 56  Q
    |||| |||||||||||||||| || ||||||||||||||||||| ||||||||    
T  185436 tgcgttagttaactaacgcaagtgtaaaactatgcgttagttaactaacgctg 185488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 47441624 - 47441684
Alignment:
Q  57 taagtaacgcaagtgttaaactctgtattacttaacgaacgccgcgtgggttaactcacgc 117  Q
    |||||||||||||||||||||||||  ||||||||| || || ||||| ||||||||||||    
T  47441624 taagtaacgcaagtgttaaactctgcgttacttaactaaagctgcgtgagttaactcacgc 47441684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 432984 - 432933
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgc 54  Q
    |||||||||||||||||||||| || |||| |||||||||||||| ||||||    
T  432984 ttgcgctagttaactaacgcaagtgtaaaattatgcgttagttaactaacgc 432933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 44226573 - 44226520
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 56  Q
    |||| ||||||||| ||||||| |||||||||||| ||||||||| ||||||||    
T  44226573 ttgctctagttaaccaacgcaagtgaaaaactatgtgttagttaactaacgctg 44226520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 1031835 - 1031791
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaa 47  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  1031835 ttgcgctagttaactaacgcaagtgaaaaactatgtgttagttaa 1031791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 4410282 - 4410234
Alignment:
Q  9 tagttaactaacgcaattgaaaaactatgcgttagttaattaacgctgt 57  Q
    |||||||||||||||| || |||||||||  |||||||| |||||||||    
T  4410282 tagttaactaacgcaagtgtaaaactatgtattagttaactaacgctgt 4410234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 35018787 - 35018739
Alignment:
Q  8 ctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 56  Q
    |||||||||| |||||| || |||||||||||||| |||| ||||||||    
T  35018787 ctagttaactcacgcaagtgtaaaactatgcgttatttaactaacgctg 35018739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 30842166 - 30842114
Alignment:
Q  4 tgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 56  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||    
T  30842166 tgcgctagttaactaacgtaattgtaaacctatgcgttagttaactaacgctg 30842114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 20513508 - 20513562
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctgt 57  Q
    ||||| |||||||||||||||| || ||||||||||| ||||||| |||||||||    
T  20513508 ttgcgttagttaactaacgcaagtgtaaaactatgcgatagttaactaacgctgt 20513562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 46182997 - 46183048
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgc 54  Q
    ||||||||||||| |||||||| || |||| |||||||||||||| ||||||    
T  46182997 ttgcgctagttaaataacgcaagtgtaaaattatgcgttagttaactaacgc 46183048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 46637107 - 46637060
Alignment:
Q  6 cgctagttaactaacgcaattgaaaaactatgcgttagttaattaacg 53  Q
    ||||||||||||||||||| || ||||||||||| ||||||| |||||    
T  46637107 cgctagttaactaacgcaaatgtaaaactatgcgctagttaagtaacg 46637060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 5848143 - 5848090
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 56  Q
    ||||||||||||||||||| || || ||||||||||| ||||||| ||||||||    
T  5848143 ttgcgctagttaactaacgtaagtgtaaaactatgcgctagttaagtaacgctg 5848090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 19380272 - 19380219
Alignment:
Q  3 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 56  Q
    |||||||||||||||||||||| || |||  |||||||||||||| ||||||||    
T  19380272 ttgcgctagttaactaacgcaagtgtaaatgtatgcgttagttaactaacgctg 19380219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 187310 - 187267
Alignment:
Q  4 tgcgctagttaactaacgcaattgaaaaactatgcgttagttaa 47  Q
    |||| |||||||||||||||| || |||||||||||||||||||    
T  187310 tgcgttagttaactaacgcaagtgtaaaactatgcgttagttaa 187267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 28599 - 28649
Alignment:
Q  4 tgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgc 54  Q
    |||| |||||||||||||||| || |||| |||||||||||||| ||||||    
T  28599 tgcgttagttaactaacgcaagtgtaaaattatgcgttagttaactaacgc 28649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 33636 - 33592
Alignment:
Q  9 tagttaactaacgcaattgaaaaactatgcgttagttaattaacg 53  Q
    |||||||||||||||| || ||||| ||||||||||||| |||||    
T  33636 tagttaactaacgcaagtgtaaaacaatgcgttagttaactaacg 33592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University